RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 SF3A1Q15459 793 aaKnown RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 ZRSR1Q15695 479 aaKnown RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 Q3C1V9 767 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 RILPL1Q5EBL4 403 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 RRP12Q5JTH9 1297 aaKnown RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 GALNT17Q6IS24 598 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 CDC37L1Q7L3B6 337 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 TEX2Q8IWB9 1127 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 RTKN2Q8IZC4 609 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 CCDC12Q8WUD4 166 aaPredicted RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 PYM1Q9BRP8 204 aaKnown RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 ALG1Q9BT22 464 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 RTFDC1Q9BY42 306 aaPredicted RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 LRRC2Q9BYS8 371 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 DHX36Q9H2U1 1008 aaKnown RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 FOXP1Q9H334 677 aaPredicted RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 TSPY26PQ9H489 355 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 MKNK2Q9HBH9 465 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 MCM9Q9NXL9 1143 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 AATFQ9NY61 560 aaKnown RBP eCLIP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 SWAP70Q9UH65 585 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 IQSEC3Q9UPP2 1182 aaPredicted RBP7.35□□□□□ -1.23
SF3A3-208ENST00000489537 CNPY2Q9Y2B0 182 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 SLC27A5Q9Y2P5 690 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 TAF6LQ9Y6J9 622 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 MAST2Q6P0Q8 1798 aa7.35□□□□□ -1.23
SF3A3-208ENST00000489537 GAKO14976 1311 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 TNKSO95271 1327 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 NEDD4P46934 1319 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 GLTPD2A6NH11 291 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 hCG_1984214I3L0E3 225 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 SNAP23O00161 211 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 ZBTB24O43167 697 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 PRPF3O43395 683 aaKnown RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 DDNO94850 711 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 CHGBP05060 677 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 POLR3DP05423 398 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 LMNB1P20700 586 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 PRDX5P30044 214 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 RPIAP49247 311 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 NASPP49321 788 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 CTDSPL2Q05D32 466 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 DHX8Q14562 1220 aaKnown RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 HS1BP3Q53T59 392 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 C12orf60Q5U649 245 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 STRIP1Q5VSL9 837 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 FOXD4L5Q5VV16 416 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 ADALQ6DHV7 355 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 CYB5R4Q7L1T6 521 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 MICU3Q86XE3 530 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 ZNF654Q8IZM8 581 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 ZNF713Q8N859 430 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 KRI1Q8N9T8 703 aaKnown RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 BICD2Q8TD16 824 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 LEO1Q8WVC0 666 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 FOXD4L4Q8WXT5 416 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 TEKT1Q969V4 418 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 TRIM44Q96DX7 344 aaPredicted RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 DDX11Q96FC9 970 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 CCDC17Q96LX7 622 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 PHOX2BQ99453 314 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 KAT14Q9H8E8 782 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 SH3GLB2Q9NR46 395 aa7.34□□□□□ -1.23
SF3A3-208ENST00000489537 NOL7Q9UMY1 257 aaKnown RBP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.34□□□□□ -1.23
SF3A3-208ENST00000489537 LAMA4Q16363 1823 aa7.34□□□□□ -1.24
SF3A3-208ENST00000489537 ZNF541Q9H0D2 1346 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 WDR90Q96KV7 1748 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 DICER1Q9UPY3 1922 aaKnown RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 IRF6O14896 467 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 PRKAB2O43741 272 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 JAK2O60674 1132 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 KINO60870 393 aaKnown RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 PPP6R2O75170 966 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 CTDNEP1O95476 244 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 TSPY3P0CV98 308 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 TSPY8P0CW00 308 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 U2AF2P26368 475 aaKnown RBP eCLIP7.33□□□□□ -1.246e-7■■■□□ 17.1
SF3A3-208ENST00000489537 BTDP43251 543 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 TRAPPC10P48553 1259 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 TRAF1Q13077 416 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 STK38Q15208 465 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 SEC23AQ15436 765 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 MAP3K11Q16584 847 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 SLFNL1Q499Z3 407 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 ZNF787Q6DD87 383 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 ELOA2Q8IYF1 753 aaPredicted RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 TEX11Q8IYF3 940 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 CCDC148Q8NFR7 591 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 GPT2Q8TD30 523 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 SDR42E1Q8WUS8 393 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 EMID1Q96A84 441 aaPredicted RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 NAT10Q9H0A0 1025 aaKnown RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 NUP62CLQ9H1M0 184 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 ZNF277Q9NRM2 450 aaPredicted RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 POLLQ9UGP5 575 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 BRPF3Q9ULD4 1205 aa7.33□□□□□ -1.24
SF3A3-208ENST00000489537 FCF1Q9Y324 198 aaKnown RBP7.33□□□□□ -1.24
SF3A3-208ENST00000489537 COL1A1P02452 1464 aaPredicted RBP7.32□□□□□ -1.24
SF3A3-208ENST00000489537 FAM187AA6NFU0 413 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms