RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 SNRPNP63162 240 aaKnown RBP7.65□□□□□ -1.18
UPF3A-205ENST00000479712 ARSHQ5FYA8 562 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 LINC00114Q6XXX2 140 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 KIAA1211Q6ZU35 1233 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 ASXL1Q8IXJ9 1541 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 MICAL1Q8TDZ2 1067 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 ACSF2Q96CM8 615 aaPredicted RBP7.65□□□□□ -1.18
UPF3A-205ENST00000479712 ATXN3LQ9H3M9 355 aa7.65□□□□□ -1.18
UPF3A-205ENST00000479712 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.64□□□□□ -1.19
UPF3A-205ENST00000479712 CDC42BPBQ9Y5S2 1711 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 SAMD9Q5K651 1589 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 FAM229AH3BQW9 127 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 PIK3R2O00459 728 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 PDPK1O15530 556 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 DDAH1O94760 285 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 GJB6O95452 261 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 ACRP10323 421 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 ADH5P11766 374 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 IFRD2Q12894 506 aaPredicted RBP7.64□□□□□ -1.19
UPF3A-205ENST00000479712 TRIM28Q13263 835 aaKnown RBP7.64□□□□□ -1.19
UPF3A-205ENST00000479712 CDCP2Q5VXM1 449 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 KRT27Q7Z3Y8 459 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 FAM13CQ8NE31 585 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 FANCD2OSQ96PS1 177 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 PUS7Q96PZ0 661 aaKnown RBP7.64□□□□□ -1.19
UPF3A-205ENST00000479712 MRPL18Q9H0U6 180 aaKnown RBP7.64□□□□□ -1.19
UPF3A-205ENST00000479712 CNNM2Q9H8M5 875 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 SUGCTQ9HAC7 445 aa7.64□□□□□ -1.19
UPF3A-205ENST00000479712 B2RBV5 119 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 CHURC1-FNTBB4DL54 471 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 TNFRSF10CO14798 259 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 ELNP15502 786 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 YARSP54577 528 aaKnown RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 RASGRF1Q13972 1273 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 ZYXQ15942 572 aaKnown RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 INTS3Q68E01 1043 aaKnown RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 IGF2-ASQ6U949 168 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 C6orf15Q6UXA7 325 aaPredicted RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 UNC5AQ6ZN44 842 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 HID1Q8IV36 788 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 FAM178BQ8IXR5 827 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 SMG8Q8ND04 991 aaKnown RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 RNF214Q8ND24 703 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 ZNF507Q8TCN5 953 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 ZNF526Q8TF50 670 aaPredicted RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 SYT17Q9BSW7 474 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 DISC1Q9NRI5 854 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 TJP2Q9UDY2 1190 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 MKL2Q9ULH7 1088 aa7.63□□□□□ -1.19
UPF3A-205ENST00000479712 TNS1Q9HBL0 1735 aaKnown RBP7.63□□□□□ -1.19
UPF3A-205ENST00000479712 FAM86C2PA6NEL3 165 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 ARHGEF15O94989 841 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 RAG1P15918 1043 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 ATF3P18847 181 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 NTF4P34130 210 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 HTRA3P83110 453 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 SOX4Q06945 474 aaPredicted RBP7.62□□□□□ -1.19
UPF3A-205ENST00000479712 TTLL4Q14679 1199 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 FDX2Q6P4F2 183 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 DYMQ7RTS9 669 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.62□□□□□ -1.19
UPF3A-205ENST00000479712 MCATQ8IVS2 390 aaKnown RBP7.62□□□□□ -1.19
UPF3A-205ENST00000479712 TMEM87BQ96K49 555 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 SLC9A7Q96T83 725 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 DNAJC7Q99615 494 aa7.62□□□□□ -1.19
UPF3A-205ENST00000479712 ATP10DQ9P241 1426 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 SPAG9O60271 1321 aaKnown RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 UPK3BL1B0FP48 263 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 UPK3BL2E5RIL1 263 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 IGHA1P01876 353 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 HCLS1P14317 486 aaPredicted RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 DRD2P14416 443 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 PRRT3Q5FWE3 981 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 GPAT2Q6NUI2 795 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 VHLLQ6RSH7 139 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 CDC37L1Q7L3B6 337 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 MRPL41Q8IXM3 137 aaKnown RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 SLFN12Q8IYM2 578 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 PHACTR4Q8IZ21 702 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 C12orf50Q8NA57 414 aaPredicted RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 RNPC3Q96LT9 517 aaKnown RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 PHAXQ9H814 394 aaKnown RBP7.61□□□□□ -1.19
UPF3A-205ENST00000479712 FBRSQ9HAH7 460 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 PIDD1Q9HB75 910 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 SLIT1O75093 1534 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 NUP188Q5SRE5 1749 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 PTCH1Q13635 1447 aa7.61□□□□□ -1.19
UPF3A-205ENST00000479712 MROH1Q8NDA8 1641 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 LTBP3Q9NS15 1303 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 ANKRD62A6NC57 917 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 RNGTTO60942 597 aaKnown RBP7.6□□□□□ -1.19
UPF3A-205ENST00000479712 TIAF1O95411 115 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 NEFMP07197 916 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 POLR2BP30876 1174 aaKnown RBP7.6□□□□□ -1.19
UPF3A-205ENST00000479712 CHMP4BP1P59074 171 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 TCEAL1Q15170 157 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 GPR162Q16538 588 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 MTERF2Q49AM1 385 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 EGFLAMQ63HQ2 1017 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 SLC6A19Q695T7 634 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 603.7 ms