RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 MYH2Q9UKX2 1941 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 FOSP01100 380 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-208ENST00000430669 FAM47AQ5JRC9 791 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 ARHGEF35A5YM69 484 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 MMP1P03956 469 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 BARGINQ6ZT62 677 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 SYNCQ9H7C4 482 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 DDX25Q9UHL0 483 aaKnown RBP12.88□□□□□ -0.35
PTCH1-208ENST00000430669 IFNAR1P17181 557 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 SUSD4Q5VX71 490 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 CASZ1Q86V15 1759 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 MYO3BQ8WXR4 1341 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 PEAK1Q9H792 1746 aa12.88□□□□□ -0.35
PTCH1-208ENST00000430669 ORC2Q13416 577 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-208ENST00000430669 HLTFQ14527 1009 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTCH1-208ENST00000430669 OTUD6AQ7L8S5 288 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 PPP1R9BQ96SB3 815 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 TSKSQ9UJT2 592 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 ZNF609O15014 1411 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 TBC1D8BQ0IIM8 1120 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 RASGRF1Q13972 1273 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 HLFQ16534 295 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 CLEC17AQ6ZS10 378 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 SLIT3O75094 1523 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 TXKP42681 527 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 KRBA2Q6ZNG9 492 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 WWC3Q9ULE0 1092 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 EZRP15311 586 aaKnown RBP12.87□□□□□ -0.35
PTCH1-208ENST00000430669 VPS72Q15906 364 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 OSBP2Q969R2 916 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 ZNF830Q96NB3 372 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-208ENST00000430669 GSTTP1A0A1W2PQM5 241 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 USP28Q96RU2 1077 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 KDM3BQ7LBC6 1761 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 PUS7LQ9H0K6 701 aaKnown RBP12.87□□□□□ -0.35
PTCH1-208ENST00000430669 TSPYL1Q9H0U9 437 aa12.87□□□□□ -0.35
PTCH1-208ENST00000430669 PRPF3O43395 683 aaKnown RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 GTPBP6O43824 516 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 STX17P56962 302 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 LRRC45Q96CN5 670 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 H0YCG3 227 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 TCP10Q12799 353 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 KRT222Q8N1A0 295 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 DYDC1Q8WWB3 177 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 JAKMIP2Q96AA8 810 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 MRPL44Q9H9J2 332 aaKnown RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 MECOMQ03112 1051 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 SEPT2Q15019 361 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 SKIDA1Q1XH10 827 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 SLC9C1Q4G0N8 1177 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 HSP90AA4PQ58FG1 418 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 WDR44Q5JSH3 913 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 PCDHA7Q9UN72 937 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 NFE2L3Q9Y4A8 694 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 BCRP11274 1271 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 ADD1P35611 737 aaKnown RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 ABCB5Q2M3G0 1257 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 GJA3Q9Y6H8 435 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 NKX1-1Q15270 411 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 MRFAP1L1Q96HT8 127 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 SEC31BQ9NQW1 1179 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 SPATA31A1Q5TZJ5 1347 aa12.86□□□□□ -0.35
PTCH1-208ENST00000430669 PRPF4BQ13523 1007 aaKnown RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 DCAF17Q5H9S7 520 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-208ENST00000430669 LIG1P18858 919 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 NDUFA8P51970 172 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 STRN3Q13033 797 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 SEMA3FQ13275 785 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 PUF60Q9UHX1 559 aaKnown RBP12.85□□□□□ -0.35
PTCH1-208ENST00000430669 SERPINB13Q9UIV8 391 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 BACH1O14867 736 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 TRIM37O94972 964 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 PNOCQ13519 176 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 RTKN2Q8IZC4 609 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 CTNNBL1Q8WYA6 563 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-208ENST00000430669 GSDMAQ96QA5 445 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 ICA1Q05084 483 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 ARL6IP4Q66PJ3 421 aaKnown RBP12.85□□□□□ -0.35
PTCH1-208ENST00000430669 SEPT12Q8IYM1 358 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 SNX16P57768 344 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 MASTLQ96GX5 879 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 KANSL2Q9H9L4 492 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 NDC80O14777 642 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 ACTN2P35609 894 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 PI4KBQ9UBF8 816 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTCH1-208ENST00000430669 FSD2A1L4K1 749 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 OPA1O60313 960 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 GAS7O60861 476 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 PTGDRQ13258 359 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 USH1GQ495M9 461 aa12.85□□□□□ -0.35
PTCH1-208ENST00000430669 STRBPQ96SI9 672 aaKnown RBP12.85□□□□□ -0.35
PTCH1-208ENST00000430669 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.84□□□□□ -0.35
PTCH1-208ENST00000430669 USP17L3A6NCW0 530 aa12.84□□□□□ -0.35
PTCH1-208ENST00000430669 USP17L4A6NCW7 530 aa12.84□□□□□ -0.35
PTCH1-208ENST00000430669 USP17L1Q7RTZ2 530 aa12.84□□□□□ -0.35
PTCH1-208ENST00000430669 CCDC155Q8N6L0 562 aa12.84□□□□□ -0.35
PTCH1-208ENST00000430669 PAF1Q8N7H5 531 aa12.84□□□□□ -0.35
PTCH1-208ENST00000430669 RCOR1Q9UKL0 485 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms