RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	APBA2	Q99767	749 aa		10.84	□□□□□ -0.67
NIF3L1-206	ENST00000416651	PKD2L1	Q9P0L9	805 aa		10.84	□□□□□ -0.67
NIF3L1-206	ENST00000416651	PIEZO1	Q92508	2521 aa		10.84	□□□□□ -0.67
NIF3L1-206	ENST00000416651	IGHA2	P01877	340 aa		10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ADORA1	P30542	326 aa		10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	IRX3	P78415	501 aa	Predicted RBP	10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	C16orf59	Q7L2K0	433 aa		10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	TIFA	Q96CG3	184 aa		10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	EDC3	Q96F86	508 aa	Known RBP	10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	PBX4	Q9BYU1	374 aa		10.83	□□□□□ -0.68
NIF3L1-206	ENST00000416651	USP17L5	A8MUK1	530 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	IFIT1	P09914	478 aa	Known RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CYBA	P13498	195 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	IGFBP4	P22692	258 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	MAPK4	P31152	587 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	HOXA7	P31268	230 aa	Predicted RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RFX5	P48382	616 aa	Predicted RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CALD1	Q05682	793 aa	Known RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	EXOSC9	Q06265	439 aa	Known RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	PUM3	Q15397	648 aa	Known RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RABL6	Q3YEC7	729 aa	Predicted RBP	10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ATG9A	Q7Z3C6	839 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SCUBE3	Q8IX30	993 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SNX27	Q96L92	541 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.82	□□□□□ -0.68	1e-7	■□□□□ 9.6
NIF3L1-206	ENST00000416651	DNAJC18	Q9H819	358 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	DACH1	Q9UI36	760 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	XIRP2	A4UGR9	3374 aa		10.82	□□□□□ -0.68
NIF3L1-206	ENST00000416651	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	GDF11	O95390	407 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	BACE1	P56817	501 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	FAM47A	Q5JRC9	791 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	WDR78	Q5VTH9	848 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	METTL3	Q86U44	580 aa	Known RBP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	TRMT44	Q8IYL2	757 aa	Known RBP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	OSBPL5	Q9H0X9	879 aa	Predicted RBP	10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	BTBD7	Q9P203	1132 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CHD7	Q9P2D1	2997 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	UTY	O14607	1347 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	FANCI	Q9NVI1	1328 aa		10.81	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SMCHD1	A6NHR9	2005 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RBAK-RBAKDN	I3L0D1	243 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SLC5A1	P13866	664 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	LRRC41	Q15345	812 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	AKNAD1	Q5T1N1	836 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	MFSD14C	Q5VZR4	134 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	WWC1	Q8IX03	1113 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CRIPAK	Q8N1N5	446 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	MICALL1	Q8N3F8	863 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	LENG1	Q96BZ8	264 aa	Predicted RBP	10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	GAS2L1	Q99501	681 aa	Predicted RBP	10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	C1QTNF1	Q9BXJ1	281 aa		10.8	□□□□□ -0.68
NIF3L1-206	ENST00000416651	GBF1	Q92538	1859 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RFXAP	O00287	272 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	GPR37	O15354	613 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	PQBP1	O60828	265 aa	Known RBP	10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ALDH1L1	O75891	902 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ACR	P10323	421 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ATP2B2	Q01814	1243 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ZYX	Q15942	572 aa	Known RBP	10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CCDC184	Q52MB2	194 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	KRT40	Q6A162	431 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	LPIN2	Q92539	896 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	WDR18	Q9BV38	432 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CHMP4A	Q9BY43	222 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SRCIN1	Q9C0H9	1055 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SIL1	Q9H173	461 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	NKX2-4	Q9H2Z4	354 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CD320	Q9NPF0	282 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	ABCF2	Q9UG63	623 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	YBX2	Q9Y2T7	364 aa	Known RBP	10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	MROH7-TTC4	A0A0A0MT08	1334 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	KIF16B	Q96L93	1317 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SALL1	Q9NSC2	1324 aa		10.79	□□□□□ -0.68
NIF3L1-206	ENST00000416651	EYA2	O00167	538 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	KIAA0355	O15063	1070 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	COBL	O75128	1261 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	WFS1	O76024	890 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CLTB	P09497	229 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RAG1	P15918	1043 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	MECOM	Q03112	1051 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	FPGS	Q05932	587 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	FAAP100	Q0VG06	881 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	DDX10	Q13206	875 aa	Known RBP	10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	RASGRF1	Q13972	1273 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	PI16	Q6UXB8	463 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CCDC129	Q6ZRS4	1044 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CCAR1	Q8IX12	1150 aa	Known RBP	10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	SPSB2	Q99619	263 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	TMOD4	Q9NZQ9	345 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	HCN4	Q9Y3Q4	1203 aa		10.78	□□□□□ -0.68
NIF3L1-206	ENST00000416651	CACNA1F	O60840	1977 aa		10.77	□□□□□ -0.68
NIF3L1-206	ENST00000416651	GPR75-ASB3	A0A0A6YYF3	556 aa		10.77	□□□□□ -0.69
NIF3L1-206	ENST00000416651	SLC15A5	A6NIM6	579 aa		10.77	□□□□□ -0.69
NIF3L1-206	ENST00000416651	KBTBD13	C9JR72	458 aa		10.77	□□□□□ -0.69
NIF3L1-206	ENST00000416651	PGK1	P00558	417 aa		10.77	□□□□□ -0.69
NIF3L1-206	ENST00000416651	HOXC6	P09630	235 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms