RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CCNA1P78396 465 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 PDE4BQ07343 736 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 TMEM132BQ14DG7 1078 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 WDR78Q5VTH9 848 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 UBE2Q1Q7Z7E8 422 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 LRRC47Q8N1G4 583 aaKnown RBP22.67■■□□□ 1.22
SF3A1-202ENST00000411423 U2AF1L4Q8WU68 220 aaKnown RBP22.67■■□□□ 1.22
SF3A1-202ENST00000411423 MKL1Q969V6 931 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 NBPF3Q9H094 633 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 FLRT1Q9NZU1 646 aa22.67■■□□□ 1.22
SF3A1-202ENST00000411423 NMT2O60551 498 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 MAP2K5Q13163 448 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 GRB14Q14449 540 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 MAP3K21Q5TCX8 1036 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 CCAR1Q8IX12 1150 aaKnown RBP22.66■■□□□ 1.22
SF3A1-202ENST00000411423 REPS2Q8NFH8 660 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 NPLOC4Q8TAT6 608 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 ZNF287Q9HBT7 754 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 IL17RBQ9NRM6 502 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 PPP1R9AQ9ULJ8 1098 aa22.66■■□□□ 1.22
SF3A1-202ENST00000411423 SGPL1O95470 568 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 FGRP09769 529 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 TSPY3P0CV98 308 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 TSPY8P0CW00 308 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 ERCC3P19447 782 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 CWC27Q6UX04 472 aaKnown RBP22.65■■□□□ 1.22
SF3A1-202ENST00000411423 DEFB118Q96PH6 123 aa22.65■■□□□ 1.22
SF3A1-202ENST00000411423 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.65■■□□□ 1.22
SF3A1-202ENST00000411423 SLC15A5A6NIM6 579 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 TTLL1O95922 423 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 SLC3A2P08195 630 aaKnown RBP22.64■■□□□ 1.21
SF3A1-202ENST00000411423 RGS2P41220 211 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 HAND2P61296 217 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 TTC22Q5TAA0 569 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 RASGRP2Q7LDG7 609 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 APBA2Q99767 749 aa22.64■■□□□ 1.21
SF3A1-202ENST00000411423 ZMYM6O95789 1325 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 PDE4DIPQ5VU43 2346 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 VWA5AO00534 786 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 CACNB2Q08289 660 aaPredicted RBP22.63■■□□□ 1.21
SF3A1-202ENST00000411423 PLS1Q14651 629 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 TBC1D10CQ8IV04 446 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 MB21D1Q8N884 522 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 SHCBP1Q8NEM2 672 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 CRISPLD2Q9H0B8 497 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 CWC22Q9HCG8 908 aaKnown RBP22.63■■□□□ 1.21
SF3A1-202ENST00000411423 ZNF214Q9UL59 606 aaPredicted RBP22.63■■□□□ 1.21
SF3A1-202ENST00000411423 ZNF236Q9UL36 1845 aa22.63■■□□□ 1.21
SF3A1-202ENST00000411423 RPTORQ8N122 1335 aa22.62■■□□□ 1.21
SF3A1-202ENST00000411423 ORC4O43929 436 aa22.62■■□□□ 1.21
SF3A1-202ENST00000411423 IGHA2P01877 340 aa22.62■■□□□ 1.21
SF3A1-202ENST00000411423 PRKAR2AP13861 404 aaKnown RBP22.62■■□□□ 1.21
SF3A1-202ENST00000411423 ZKSCAN1P17029 563 aaPredicted RBP22.62■■□□□ 1.21
SF3A1-202ENST00000411423 GMCL1P1Q8NEA9 526 aa22.62■■□□□ 1.21
SF3A1-202ENST00000411423 CHMP4CQ96CF2 233 aa22.62■■□□□ 1.21
SF3A1-202ENST00000411423 TSPY2A6NKD2 308 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 COBLO75128 1261 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 HOXC6P09630 235 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 ADORA2AP29274 412 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 NOVP48745 357 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 DIAPH3Q9NSV4 1193 aa22.61■■□□□ 1.21
SF3A1-202ENST00000411423 RANBP6O60518 1105 aaKnown RBP22.6■■□□□ 1.21
SF3A1-202ENST00000411423 CCND3P30281 292 aaPredicted RBP22.6■■□□□ 1.21
SF3A1-202ENST00000411423 SLFN13Q68D06 897 aa22.6■■□□□ 1.21
SF3A1-202ENST00000411423 NCAPG2Q86XI2 1143 aa22.6■■□□□ 1.21
SF3A1-202ENST00000411423 SLF1Q9BQI6 1058 aa22.6■■□□□ 1.21
SF3A1-202ENST00000411423 HMX1Q9NP08 348 aaPredicted RBP22.6■■□□□ 1.21
SF3A1-202ENST00000411423 IVNS1ABPQ9Y6Y0 642 aa22.6■■□□□ 1.21
SF3A1-202ENST00000411423 MNX1P50219 401 aaPredicted RBP22.59■■□□□ 1.21
SF3A1-202ENST00000411423 RRP12Q5JTH9 1297 aaKnown RBP22.59■■□□□ 1.21
SF3A1-202ENST00000411423 PRPF38BQ5VTL8 546 aaKnown RBP22.59■■□□□ 1.21
SF3A1-202ENST00000411423 DIS3LQ8TF46 1054 aaKnown RBP22.59■■□□□ 1.21
SF3A1-202ENST00000411423 SYNPO2Q9UMS6 1093 aa22.59■■□□□ 1.21
SF3A1-202ENST00000411423 RIPK3Q9Y572 518 aa22.59■■□□□ 1.21
SF3A1-202ENST00000411423 TFRCP02786 760 aaKnown RBP22.58■■□□□ 1.21
SF3A1-202ENST00000411423 SKAP1Q86WV1 359 aa22.58■■□□□ 1.21
SF3A1-202ENST00000411423 RIOX2Q8IUF8 465 aa22.58■■□□□ 1.21
SF3A1-202ENST00000411423 TRMT44Q8IYL2 757 aaKnown RBP22.58■■□□□ 1.21
SF3A1-202ENST00000411423 TRPV1Q8NER1 839 aa22.58■■□□□ 1.21
SF3A1-202ENST00000411423 MROH8Q9H579 483 aa22.58■■□□□ 1.21
SF3A1-202ENST00000411423 STX8Q9UNK0 236 aa22.58■■□□□ 1.21
SF3A1-202ENST00000411423 NEDD4P46934 1319 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 LAMA4Q16363 1823 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 FARP2O94887 1054 aaPredicted RBP22.57■■□□□ 1.2
SF3A1-202ENST00000411423 CYP2C19P33261 490 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 STAT3P40763 770 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 STAG1Q8WVM7 1258 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 KIFC2Q96AC6 838 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 TOMM22Q9NS69 142 aa22.57■■□□□ 1.2
SF3A1-202ENST00000411423 HIP1O00291 1037 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 STRNO43815 780 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 BMP3P12645 472 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 MCCP23508 829 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 AKNAD1Q5T1N1 836 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 LHX8Q68G74 356 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 PRPF38AQ8NAV1 312 aaKnown RBP22.56■■□□□ 1.2
SF3A1-202ENST00000411423 GMCL1Q96IK5 515 aa22.56■■□□□ 1.2
SF3A1-202ENST00000411423 SLC25A27O95847 323 aa22.55■■□□□ 1.2
SF3A1-202ENST00000411423 MFAP1P55081 439 aaKnown RBP22.55■■□□□ 1.2
SF3A1-202ENST00000411423 DPP9Q86TI2 863 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms