RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 UQCRHP07919 91 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 ERCC3P19447 782 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 ZKSCAN8Q15776 578 aaPredicted RBP9.26□□□□□ -0.93
LIMS1-203ENST00000393310 TAF12Q16514 161 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 KDM6AO15550 1401 aaPredicted RBP9.26□□□□□ -0.93
LIMS1-203ENST00000393310 BTBD19C9JJ37 291 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 NT5C2P49902 561 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 RTP1P59025 263 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 NOLC1Q14978 699 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMS1-203ENST00000393310 SETDB1Q15047 1291 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 CES5AQ6NT32 575 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 SEPT8Q92599 483 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 ZRSR1Q15695 479 aaKnown RBP9.26□□□□□ -0.93
LIMS1-203ENST00000393310 RRP12Q5JTH9 1297 aaKnown RBP9.26□□□□□ -0.93
LIMS1-203ENST00000393310 KCNV1Q6PIU1 500 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 NLRX1Q86UT6 975 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 ANKRD20A12PQ8NF67 263 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 PHACTR3Q96KR7 559 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 RUFY1Q96T51 708 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 BRD1O95696 1058 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 PPP2R5AQ15172 486 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 ZDHHC15Q96MV8 337 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 MOXD2PA6NHM9 499 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 RAB11FIP3O75154 756 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 ERCC4Q92889 916 aaPredicted RBP9.25□□□□□ -0.93
LIMS1-203ENST00000393310 FAM161BQ96MY7 647 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 FSD1Q9BTV5 496 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 STAP2Q9UGK3 403 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 DDX20Q9UHI6 824 aaKnown RBP9.25□□□□□ -0.93
LIMS1-203ENST00000393310 NKRFO15226 690 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIMS1-203ENST00000393310 NCAM2O15394 837 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 STAT3P40763 770 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 C7orf31Q8N865 590 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 RASSF4Q9H2L5 321 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 MLXIPQ9HAP2 919 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 PTPDC1A2A3K4 754 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 CLTBP09497 229 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 INF2Q27J81 1249 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 CST9Q5W186 159 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 SMC3Q9UQE7 1217 aa9.25□□□□□ -0.93
LIMS1-203ENST00000393310 SESN3P58005 492 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 RASSF8Q8NHQ8 419 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 IRAK4Q9NWZ3 460 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 FEZ2Q9UHY8 353 aaPredicted RBP9.24□□□□□ -0.93
LIMS1-203ENST00000393310 ALS2Q96Q42 1657 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 HOXA2O43364 376 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 GNAQP50148 359 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 KRT17Q04695 432 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 PRKCZQ05513 592 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 TTLL4Q14679 1199 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 ALDH1L2Q3SY69 923 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 LDLRAD1Q5T700 205 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 AACSQ86V21 672 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 RNF168Q8IYW5 571 aaPredicted RBP9.24□□□□□ -0.93
LIMS1-203ENST00000393310 PDCL2Q8N4E4 241 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 DDX19BQ9UMR2 479 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 COLQQ9Y215 455 aaPredicted RBP9.24□□□□□ -0.93
LIMS1-203ENST00000393310 SLC1A4P43007 532 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 FOXD4Q12950 439 aaPredicted RBP9.24□□□□□ -0.93
LIMS1-203ENST00000393310 TSHZ1Q6ZSZ6 1077 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 CKAP2LQ8IYA6 745 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 PLA2G12BQ9BX93 195 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 C4BP0C0L5 1744 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 ZNF609O15014 1411 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 DYNC1I1O14576 645 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 NBPF7P0C2Y1 421 aaPredicted RBP9.24□□□□□ -0.93
LIMS1-203ENST00000393310 SLMAPQ14BN4 828 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 PPP2R5BQ15173 497 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 MAPKAPK5Q8IW41 473 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 TGFBRAP1Q8WUH2 860 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 YME1L1Q96TA2 773 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 TMEM39BQ9GZU3 492 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 GLT8D2Q9H1C3 349 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 BRMS1Q9HCU9 246 aa9.24□□□□□ -0.93
LIMS1-203ENST00000393310 GOLGA6L10A0A0M3HER8 536 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 RFC2P35250 354 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 FOXK2Q01167 660 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 CWF19L2Q2TBE0 894 aaKnown RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 RNF20Q5VTR2 975 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 KIF1BPQ96EK5 621 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 TRERF1Q96PN7 1200 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 UNC93B1Q9H1C4 597 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 BRWD3Q6RI45 1802 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 NFAT5O94916 1531 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 WDR46O15213 610 aaKnown RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 SYN1P17600 705 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 HERVK_113P62684 666 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 KRBA2Q6ZNG9 492 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 FMNL3Q8IVF7 1028 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 CHST13Q8NET6 341 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 ZNF333Q96JL9 665 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 CDHR1Q96JP9 859 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 SLC4A9Q96Q91 983 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 UHRF1Q96T88 793 aaPredicted RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 PIDD1Q9HB75 910 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 TMEM51Q9NW97 253 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 STX8Q9UNK0 236 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 MRPL11Q9Y3B7 192 aaKnown RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 ADGRA2Q96PE1 1338 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 KIF5BP33176 963 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms