RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 MINDY4BA8MYZ0 360 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 UPK3BL1B0FP48 263 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 UPK3BL2E5RIL1 263 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 ZSWIM9Q86XI8 627 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 RNF141Q8WVD5 230 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 UBE2FQ969M7 185 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 GPR62Q9BZJ7 368 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 TRIT1Q9H3H1 467 aaKnown RBP6.69□□□□□ -1.34
USP48-202ENST00000374730 ZSWIM5Q9P217 1185 aa6.69□□□□□ -1.34
USP48-202ENST00000374730 SUPT16HQ9Y5B9 1047 aaKnown RBP6.69□□□□□ -1.34
USP48-202ENST00000374730 POLR1AO95602 1720 aaPredicted RBP6.69□□□□□ -1.34
USP48-202ENST00000374730 GREM1O60565 184 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 GDNFP39905 211 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 AFMP43652 599 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 MLECQ14165 292 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 CWF19L2Q2TBE0 894 aaKnown RBP6.68□□□□□ -1.34
USP48-202ENST00000374730 TMCO4Q5TGY1 634 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 FBXL19Q6PCT2 694 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 HS2ST1Q7LGA3 356 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 DTWD2Q8NBA8 298 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 CCDC74BQ96LY2 380 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 ALPK1Q96QP1 1244 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 COPRSQ9NQ92 184 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 C19orf73Q9NVV2 129 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 KCNH3Q9ULD8 1083 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 ARHGEF5Q12774 1597 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 PREX2Q70Z35 1606 aa6.68□□□□□ -1.34
USP48-202ENST00000374730 GRIN3BO60391 1043 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 SRFP11831 508 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 EIF4A3P38919 411 aaKnown RBP6.67□□□□□ -1.34
USP48-202ENST00000374730 KCNMB1Q16558 191 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 GAB4Q2WGN9 574 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 FBXO27Q8NI29 283 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 YTHDC1Q96MU7 727 aaKnown RBP6.67□□□□□ -1.34
USP48-202ENST00000374730 ASPNQ9BXN1 380 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 DUSP15Q9H1R2 295 aaPredicted RBP6.67□□□□□ -1.34
USP48-202ENST00000374730 RRP7BPQ9NSQ0 103 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 FAM53CQ9NYF3 392 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 KLHL3Q9UH77 587 aa6.67□□□□□ -1.34
USP48-202ENST00000374730 ATP10BO94823 1461 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 RPRD2Q5VT52 1461 aaKnown RBP6.66□□□□□ -1.34
USP48-202ENST00000374730 TEX14Q8IWB6 1497 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 KDM5DQ9BY66 1539 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 CHURC1-FNTBB4DL54 471 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 ATE1O95260 518 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 ESR1P03372 595 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 GPATCH2Q9NW75 528 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 GGT7Q9UJ14 662 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 CDC42BPBQ9Y5S2 1711 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 NCOA1Q15788 1441 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 PZPP20742 1482 aa6.66□□□□□ -1.34
USP48-202ENST00000374730 TLR3O15455 904 aaKnown RBP6.65□□□□□ -1.34
USP48-202ENST00000374730 DNAJA2O60884 412 aa6.65□□□□□ -1.34
USP48-202ENST00000374730 C8AP07357 584 aa6.65□□□□□ -1.34
USP48-202ENST00000374730 ZNF16P17020 682 aaPredicted RBP6.65□□□□□ -1.34
USP48-202ENST00000374730 TNNI2P48788 182 aa6.65□□□□□ -1.34
USP48-202ENST00000374730 KIRREL1Q96J84 757 aa6.65□□□□□ -1.34
USP48-202ENST00000374730 KREMEN1Q96MU8 473 aa6.65□□□□□ -1.34
USP48-202ENST00000374730 RGS13O14921 159 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 FARP2O94887 1054 aaPredicted RBP6.64□□□□□ -1.35
USP48-202ENST00000374730 GLI1P08151 1106 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 TPP2P29144 1249 aaPredicted RBP6.64□□□□□ -1.35
USP48-202ENST00000374730 TSPYL5Q86VY4 417 aaPredicted RBP6.64□□□□□ -1.35
USP48-202ENST00000374730 PHACTR4Q8IZ21 702 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 BAHD1Q8TBE0 780 aaPredicted RBP6.64□□□□□ -1.35
USP48-202ENST00000374730 ZNF296Q8WUU4 475 aaPredicted RBP6.64□□□□□ -1.35
USP48-202ENST00000374730 MPHOSPH9Q99550 1183 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 SLAMF8Q9P0V8 285 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 GMIPQ9P107 970 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 TMEM59LQ9UK28 342 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 ANKRD30BQ9BXX2 1392 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 MAST1Q9Y2H9 1570 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 MYO5CQ9NQX4 1742 aa6.64□□□□□ -1.35
USP48-202ENST00000374730 ZNF503-AS2A6NEH8 195 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 BTBD11A6QL63 1104 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 FYB2Q5VWT5 728 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 CREG2Q8IUH2 290 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 SAMD9LQ8IVG5 1584 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 REXO1Q8N1G1 1221 aaKnown RBP6.63□□□□□ -1.35
USP48-202ENST00000374730 ANKRD30AQ9BXX3 1397 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 ZNF644Q9H582 1327 aaPredicted RBP6.63□□□□□ -1.35
USP48-202ENST00000374730 EHMT1Q9H9B1 1298 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 BRMS1Q9HCU9 246 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 MBD5Q9P267 1494 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 CFDP1Q9UEE9 299 aaPredicted RBP6.63□□□□□ -1.35
USP48-202ENST00000374730 ADAMTS1Q9UHI8 967 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 DUSP13Q9UII6 198 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 PCDHB14Q9Y5E9 798 aa6.63□□□□□ -1.35
USP48-202ENST00000374730 ARID1BQ8NFD5 2236 aaPredicted RBP6.62□□□□□ -1.35
USP48-202ENST00000374730 CLASP1Q7Z460 1538 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 ABCC2Q92887 1545 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 PTPRGP23470 1445 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 C9orf84Q5VXU9 1444 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 RBM47A0AV96 593 aaKnown RBP6.62□□□□□ -1.35
USP48-202ENST00000374730 SLC22A31A6NKX4 558 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.62□□□□□ -1.35
USP48-202ENST00000374730 RBAK-RBAKDNI3L0D1 243 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 CCER2I3L3R5 266 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 RAC2P15153 192 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 CRKP46108 304 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 270.1 ms