RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 CASP8Q14790 479 aa17.61■□□□□ 0.41
COL17A1-202ENST00000369733 NAA30Q147X3 362 aaPredicted RBP17.61■□□□□ 0.41
COL17A1-202ENST00000369733 INF2Q27J81 1249 aa17.61■□□□□ 0.41
COL17A1-202ENST00000369733 ABCB6Q9NP58 842 aa17.61■□□□□ 0.41
COL17A1-202ENST00000369733 AATFQ9NY61 560 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL17A1-202ENST00000369733 JRKLQ9Y4A0 524 aa17.61■□□□□ 0.41
COL17A1-202ENST00000369733 MED23Q9ULK4 1368 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 ZMYM1Q5SVZ6 1142 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 ZBTB21Q9ULJ3 1066 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 PBRM1Q86U86 1689 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 GNA14O95837 355 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 ADCY7P51828 1080 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 ST5P78524 1137 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 RAD51AP2Q09MP3 1159 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 NYXQ9GZU5 481 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 ATP1A3P13637 1013 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 GYS2P54840 703 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 IFT88Q13099 833 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 WDR66Q8TBY9 1149 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 EPHB4P54760 987 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 CFAP157Q5JU67 520 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 KIF2CQ99661 725 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 COPRSQ9NQ92 184 aa17.6■□□□□ 0.41
COL17A1-202ENST00000369733 KCNA6P17658 529 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 STX2P32856 288 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 CCDC62Q6P9F0 684 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 SH3TC1Q8TE82 1336 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 U2AF1L4Q8WU68 220 aaKnown RBP17.59■□□□□ 0.41
COL17A1-202ENST00000369733 DPH5Q9H2P9 285 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 MROH5Q6ZUA9 1318 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 PLEKHG3A1L390 1219 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 ZSCAN10Q96SZ4 725 aaPredicted RBP17.59■□□□□ 0.41
COL17A1-202ENST00000369733 MYO1CO00159 1063 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 CCDC144BQ3MJ40 725 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 FAM47AQ5JRC9 791 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 TEX11Q8IYF3 940 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 BLIDQ8IZY5 108 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 ANKRD13CQ8N6S4 541 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 SAMSN1Q9NSI8 373 aaKnown RBP17.59■□□□□ 0.41
COL17A1-202ENST00000369733 TXNDC16Q9P2K2 825 aa17.59■□□□□ 0.41
COL17A1-202ENST00000369733 MORC2Q9Y6X9 1032 aaPredicted RBP17.59■□□□□ 0.41
COL17A1-202ENST00000369733 PTGDRQ13258 359 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 PTPROQ16827 1216 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 NCAPH2Q6IBW4 605 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 SMYD4Q8IYR2 804 aaPredicted RBP17.58■□□□□ 0.41
COL17A1-202ENST00000369733 GRAMD1CQ8IYS0 662 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 CCDC170Q8IYT3 715 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 ENOX1Q8TC92 643 aaKnown RBP17.58■□□□□ 0.41
COL17A1-202ENST00000369733 LZTS2Q9BRK4 669 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 TCHPQ9BT92 498 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.58■□□□□ 0.41
COL17A1-202ENST00000369733 HOMER3Q9NSC5 361 aa17.58■□□□□ 0.41
COL17A1-202ENST00000369733 B4DLN1 442 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 CLTAP09496 248 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 LRRC24Q50LG9 513 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 BANK1Q8NDB2 785 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 CCDC110Q8TBZ0 833 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 ANAPC4Q9UJX5 808 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 CHMP2AO43633 222 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 KRT15P19012 456 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 HIBADHP31937 336 aaKnown RBP17.58■□□□□ 0.4
COL17A1-202ENST00000369733 C2orf54Q08AI8 447 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 ARHGAP24Q8N264 748 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 RAB3IPQ96QF0 476 aaPredicted RBP17.58■□□□□ 0.4
COL17A1-202ENST00000369733 KRT12Q99456 494 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL17A1-202ENST00000369733 KLHL14Q9P2G3 628 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 COMMD10Q9Y6G5 202 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 PDE6AP16499 860 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 VPS52Q8N1B4 723 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 AGTPBP1Q9UPW5 1226 aa17.58■□□□□ 0.4
COL17A1-202ENST00000369733 USP27XA6NNY8 438 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 MYOCDQ8IZQ8 938 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 PANX2Q96RD6 677 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 FOXP1Q9H334 677 aaPredicted RBP17.57■□□□□ 0.4
COL17A1-202ENST00000369733 ADAM21Q9UKJ8 722 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 TNKSO95271 1327 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 CC2D1AQ6P1N0 951 aaPredicted RBP17.57■□□□□ 0.4
COL17A1-202ENST00000369733 TBC1D31Q96DN5 1066 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 PGBD1Q96JS3 809 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 TUBGCP2Q9BSJ2 902 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 DNM3Q9UQ16 869 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 HIP1RO75146 1068 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 RASSF2P50749 326 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 EIF6P56537 245 aaKnown RBP17.57■□□□□ 0.4
COL17A1-202ENST00000369733 RASSF7Q02833 373 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 WDR44Q5JSH3 913 aa17.57■□□□□ 0.4
COL17A1-202ENST00000369733 POLR2FP61218 127 aaKnown RBP17.56■□□□□ 0.4
COL17A1-202ENST00000369733 MAP7D1Q3KQU3 841 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 TRIM68Q6AZZ1 485 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 M0R2C6 588 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 LIN9Q5TKA1 542 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 APOA5Q6Q788 366 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 REXO1Q8N1G1 1221 aaKnown RBP17.56■□□□□ 0.4
COL17A1-202ENST00000369733 FAM212AQ96EL1 285 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 CNOT6LQ96LI5 555 aaKnown RBP17.56■□□□□ 0.4
COL17A1-202ENST00000369733 MAK16Q9BXY0 300 aaKnown RBP17.56■□□□□ 0.4
COL17A1-202ENST00000369733 GCNT3O95395 438 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 TPTE2Q6XPS3 522 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 DPH6Q7L8W6 267 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms