RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ZNF543Q08ER8 600 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 RBM26Q5T8P6 1007 aaKnown RBP17.82■□□□□ 0.44
LIMS1-202ENST00000338045 GDF11O95390 407 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 TNNI2P48788 182 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 ICA1Q05084 483 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 TNFAIP1Q13829 316 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 CDAN1Q8IWY9 1227 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 TNFRSF25Q93038 417 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 SYNPO2Q9UMS6 1093 aa17.81■□□□□ 0.44
LIMS1-202ENST00000338045 SBF1O95248 1867 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 GH2P01242 217 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 TOB1P50616 345 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-202ENST00000338045 SLC39A14Q15043 492 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 STK38Q15208 465 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 PTPAQ15257 358 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 RILPL1Q5EBL4 403 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 GPATCH4Q5T3I0 446 aaKnown RBP17.8■□□□□ 0.44
LIMS1-202ENST00000338045 CCDC183Q5T5S1 534 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 SAMD7Q7Z3H4 446 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 PIBF1Q8WXW3 757 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 BRMS1Q9HCU9 246 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 BARHL2Q9NY43 387 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 SPTLC2O15270 562 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 LIG1P18858 919 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 CALML3P27482 149 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 RASA3Q14644 834 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 SF3A1Q15459 793 aaKnown RBP17.8■□□□□ 0.44
LIMS1-202ENST00000338045 WWC2Q6AWC2 1192 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 ILDR2Q71H61 639 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 GPC2Q8N158 579 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 CPVLQ9H3G5 476 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 CABP5Q9NP86 173 aa17.8■□□□□ 0.44
LIMS1-202ENST00000338045 FRMPD2Q68DX3 1309 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-202ENST00000338045 NLRP5P59047 1200 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 ATP2B2Q01814 1243 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 KIF4BQ2VIQ3 1234 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 ADALQ6DHV7 355 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 TYW1BQ6NUM6 668 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 GAS2L3Q86XJ1 694 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 RRP36Q96EU6 259 aaKnown RBP17.79■□□□□ 0.44
LIMS1-202ENST00000338045 TEPSINQ96N21 525 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.79■□□□□ 0.44
LIMS1-202ENST00000338045 PCDHA7Q9UN72 937 aa17.79■□□□□ 0.44
LIMS1-202ENST00000338045 STXBP3O00186 592 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 PPP6R2O75170 966 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 ME1P48163 572 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 TBC1D10BQ4KMP7 808 aaPredicted RBP17.78■□□□□ 0.44
LIMS1-202ENST00000338045 GALNT17Q6IS24 598 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 GMCL1P1Q8NEA9 526 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 BICD2Q8TD16 824 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 DCAF4Q8WV16 495 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 GPKOWQ92917 476 aaPredicted RBP eCLIP17.78■□□□□ 0.44
LIMS1-202ENST00000338045 UBA5Q9GZZ9 404 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 A0A1W2PQ27 194 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 A0A1W2PQ64 194 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 A0A1W2PQD8 194 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 GOLGA6L3A6NEY3 463 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 H7C1D1 291 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 TPRNQ4KMQ1 711 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 DAGLBQ8NCG7 672 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 CCDC148Q8NFR7 591 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 GPRC5DQ9NZD1 345 aa17.78■□□□□ 0.44
LIMS1-202ENST00000338045 SYCE3A1L190 88 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 hCG_1984214I3L0E3 225 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 M0R2N6 131 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 EARS2Q5JPH6 523 aaKnown RBP17.77■□□□□ 0.43
LIMS1-202ENST00000338045 ZNF713Q8N859 430 aaPredicted RBP17.77■□□□□ 0.43
LIMS1-202ENST00000338045 SEC63Q9UGP8 760 aaKnown RBP17.77■□□□□ 0.43
LIMS1-202ENST00000338045 HACL1Q9UJ83 578 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 ZBTB21Q9ULJ3 1066 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 PCDHA4Q9UN74 947 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 MORC2Q9Y6X9 1032 aaPredicted RBP17.77■□□□□ 0.43
LIMS1-202ENST00000338045 UTRNP46939 3433 aa17.77■□□□□ 0.43
LIMS1-202ENST00000338045 LETM1O95202 739 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-202ENST00000338045 YBX3P16989 372 aaKnown RBP eCLIP17.76■□□□□ 0.435e-7■□□□□ 9.2
LIMS1-202ENST00000338045 AXDND1Q5T1B0 1012 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-202ENST00000338045 SLFN13Q68D06 897 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 LRSAM1Q6UWE0 723 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 HEATR3Q7Z4Q2 680 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 MTMR8Q96EF0 704 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 GMCL1Q96IK5 515 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 PIGSQ96S52 555 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 GPCPD1Q9NPB8 672 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 DDX19AQ9NUU7 478 aaKnown RBP17.76■□□□□ 0.43
LIMS1-202ENST00000338045 DACT1Q9NYF0 836 aa17.76■□□□□ 0.43
LIMS1-202ENST00000338045 ASTN2O75129 1339 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-202ENST00000338045 F5H6K3 240 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 CAP2P40123 477 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 KLRC3Q07444 240 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 TTBK2Q6IQ55 1244 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 MIGA2Q7L4E1 593 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 CCAR1Q8IX12 1150 aaKnown RBP17.75■□□□□ 0.43
LIMS1-202ENST00000338045 BLIDQ8IZY5 108 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 JMYQ8N9B5 988 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 CCDC12Q8WUD4 166 aaPredicted RBP17.75■□□□□ 0.43
LIMS1-202ENST00000338045 ZMYND12Q9H0C1 365 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 A0A1W2PRG0 241 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 FAM205CA6NFA0 338 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 NR1I2O75469 434 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 SLC1A4P43007 532 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms