RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 TRAPPC10P48553 1259 aa21.57■■□□□ 1.04
RTN4-201ENST00000317610 LMAN1P49257 510 aa21.57■■□□□ 1.04
RTN4-201ENST00000317610 IFIT1BQ5T764 474 aaKnown RBP21.57■■□□□ 1.04
RTN4-201ENST00000317610 ZNF658Q5TYW1 1059 aaPredicted RBP21.57■■□□□ 1.04
RTN4-201ENST00000317610 TMTC3Q6ZXV5 915 aa21.57■■□□□ 1.04
RTN4-201ENST00000317610 MAGEB6P1A0A0J9YX57 407 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 hCG_1642624A0A1W2PR95 340 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 WDR93Q6P2C0 686 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 ANKRD20A12PQ8NF67 263 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 BLZF1Q9H2G9 400 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 CWC15Q9P013 229 aaKnown RBP21.56■■□□□ 1.04
RTN4-201ENST00000317610 CACNA1SQ13698 1873 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 KCNJ18B7U540 433 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 TFRCP02786 760 aaKnown RBP21.56■■□□□ 1.04
RTN4-201ENST00000317610 PCP11498 1178 aaKnown RBP21.56■■□□□ 1.04
RTN4-201ENST00000317610 CDC25AP30304 524 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 ACTN2P35609 894 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 KCNJ12Q14500 433 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 SUSD4Q5VX71 490 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 STAMQ92783 540 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 NUP88Q99567 741 aaPredicted RBP21.56■■□□□ 1.04
RTN4-201ENST00000317610 RIOK1Q9BRS2 568 aaKnown RBP21.56■■□□□ 1.04
RTN4-201ENST00000317610 VPS16Q9H269 839 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 TAB2Q9NYJ8 693 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 MYO6Q9UM54 1294 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 CNTNAP5Q8WYK1 1306 aa21.56■■□□□ 1.04
RTN4-201ENST00000317610 LAMB2P55268 1798 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 A0A0U1RQG5 324 aaPredicted RBP21.55■■□□□ 1.04
RTN4-201ENST00000317610 SMIM22K7EJ46 135 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 RHOXF2BP0C7M4 288 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 NELFBQ8WX92 580 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 RHOXF2Q9BQY4 288 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 RMND1Q9NWS8 449 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 VPS18Q9P253 973 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 FEZ2Q9UHY8 353 aaPredicted RBP21.55■■□□□ 1.04
RTN4-201ENST00000317610 RREB1Q92766 1687 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 PHLPP1O60346 1717 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 GTF2E1P29083 439 aaPredicted RBP21.55■■□□□ 1.04
RTN4-201ENST00000317610 KRT9P35527 623 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 CASP8Q14790 479 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 IQSEC3Q9UPP2 1182 aaPredicted RBP21.55■■□□□ 1.04
RTN4-201ENST00000317610 REXO2Q9Y3B8 237 aaKnown RBP21.55■■□□□ 1.04
RTN4-201ENST00000317610 ZNF804BA4D1E1 1349 aa21.55■■□□□ 1.04
RTN4-201ENST00000317610 BAZ2AQ9UIF9 1905 aaKnown RBP21.54■■□□□ 1.04
RTN4-201ENST00000317610 IL17AQ16552 155 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 SLF1Q9BQI6 1058 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 BRIP1Q9BX63 1249 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 SUGCTQ9HAC7 445 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 COBLO75128 1261 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 RPS6KA5O75582 802 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 IQCA1Q86XH1 822 aa21.54■■□□□ 1.04
RTN4-201ENST00000317610 NOA1Q8NC60 698 aaKnown RBP21.54■■□□□ 1.04
RTN4-201ENST00000317610 PSMD14O00487 310 aa21.53■■□□□ 1.04
RTN4-201ENST00000317610 IGHMBP2P38935 993 aaKnown RBP21.53■■□□□ 1.04
RTN4-201ENST00000317610 TRAPPC11Q7Z392 1133 aa21.53■■□□□ 1.04
RTN4-201ENST00000317610 FAM71BQ8TC56 605 aa21.53■■□□□ 1.04
RTN4-201ENST00000317610 EPN1Q9Y6I3 576 aaPredicted RBP21.53■■□□□ 1.04
RTN4-201ENST00000317610 H7C1D1 291 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 NDUFA10O95299 355 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 RPN1P04843 607 aaKnown RBP21.52■■□□□ 1.04
RTN4-201ENST00000317610 CCDC152Q4G0S7 254 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 N4BP1O75113 896 aaKnown RBP21.52■■□□□ 1.04
RTN4-201ENST00000317610 ARL6IP4Q66PJ3 421 aaKnown RBP21.52■■□□□ 1.04
RTN4-201ENST00000317610 IRF2BP1Q8IU81 584 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 TRERF1Q96PN7 1200 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 CHP1Q99653 195 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 FAN1Q9Y2M0 1017 aa21.52■■□□□ 1.04
RTN4-201ENST00000317610 A0A1W2PQC6 194 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 CHRNDQ07001 517 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 ZNF662Q6ZS27 426 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 SRBD1Q8N5C6 995 aaKnown RBP21.51■■□□□ 1.03
RTN4-201ENST00000317610 DNAJC7Q99615 494 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 HAUS4Q9H6D7 363 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 VIPAS39Q9H9C1 493 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 MED4Q9NPJ6 270 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 A0A1B0GUL6 1792 aa21.51■■□□□ 1.03
RTN4-201ENST00000317610 COL1A1P02452 1464 aaPredicted RBP21.51■■□□□ 1.03
RTN4-201ENST00000317610 LONP1P36776 959 aaKnown RBP21.5■■□□□ 1.03
RTN4-201ENST00000317610 PRCPP42785 496 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 UBXN1Q04323 297 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 WWC2Q6AWC2 1192 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 NCAPH2Q6IBW4 605 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 PIK3AP1Q6ZUJ8 805 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 C4orf32Q8N8J7 132 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 OR8K1Q8NGG5 319 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 BBXQ8WY36 941 aaPredicted RBP21.5■■□□□ 1.03
RTN4-201ENST00000317610 LGALS16A8MUM7 142 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 IVLP07476 585 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 PARP1P09874 1014 aaKnown RBP21.5■■□□□ 1.03
RTN4-201ENST00000317610 SCG2P13521 617 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 EIF5P55010 431 aaKnown RBP21.5■■□□□ 1.03
RTN4-201ENST00000317610 ADSSL1Q8N142 457 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 MB21D1Q8N884 522 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 ZNF507Q8TCN5 953 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 ACBD3Q9H3P7 528 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.5■■□□□ 1.035e-6■□□□□ 9.7
RTN4-201ENST00000317610 GDAQ9Y2T3 454 aa21.5■■□□□ 1.03
RTN4-201ENST00000317610 CYP2D7A0A087X1C5 515 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 TTC26A0AVF1 554 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 USP14P54578 494 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms