RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 IL17REQ8NFR9 667 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 LSM14BQ9BX40 385 aaKnown RBP18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 HYOU1Q9Y4L1 999 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 EIF3CLB5ME19 914 aaKnown RBP18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 SMC1BQ8NDV3 1235 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 EIF3CQ99613 913 aaKnown RBP18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 DDX23Q9BUQ8 820 aaKnown RBP18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 HAUS4Q9H6D7 363 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 MRPL44Q9H9J2 332 aaKnown RBP18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 STK38LQ9Y2H1 464 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 RNF40O75150 1001 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 ABCB4P21439 1286 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 ANKRD13CQ8N6S4 541 aa18.18■□□□□ 0.5
SH3RF1-201ENST00000284637 RGS16O15492 202 aaPredicted RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 COBLO75128 1261 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 UFL1O94874 794 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 FGAP02671 866 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 PPARAQ07869 468 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 TTC19Q6DKK2 380 aaPredicted RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 RDH13Q8NBN7 331 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 U2AF1L4Q8WU68 220 aaKnown RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 GBP5Q96PP8 586 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 PCDHB13Q9Y5F0 798 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 DDX39AO00148 427 aaKnown RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 DPCR1Q3MIW9 517 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 REXO1Q8N1G1 1221 aaKnown RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 LRRD1A4D1F6 860 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 CCDC14Q49A88 953 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 MAP4K1Q92918 833 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 DNM2P50570 870 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 PARP10Q53GL7 1025 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 CEP128Q6ZU80 1094 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 MAPKAPK5Q8IW41 473 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 KIFC2Q96AC6 838 aa18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 NUCKS1Q9H1E3 243 aaKnown RBP18.17■□□□□ 0.5
SH3RF1-201ENST00000284637 LOC102724159A0A0B4J2E5 919 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 RPSAP08865 295 aaKnown RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 PWP2Q15269 919 aaKnown RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 SPATA1Q5VX52 437 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 FANCBQ8NB91 859 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 C19orf44Q9H6X5 657 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 BIN2Q9UBW5 565 aaPredicted RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 EPN1Q9Y6I3 576 aaPredicted RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 NOL3O60936 208 aaKnown RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 CCDC170Q8IYT3 715 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 PARD6BQ9BYG5 372 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 SPATA31E1Q6ZUB1 1445 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 PPM1FP49593 454 aaPredicted RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 KMT5BQ4FZB7 885 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 SDCCAG8Q86SQ7 713 aaPredicted RBP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 DNAJC10Q8IXB1 793 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 FTOQ9C0B1 505 aaKnown RBP eCLIP18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 AMFRQ9UKV5 643 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 FAM184BQ9ULE4 1060 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 CASP14P31944 242 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 CCDC62Q6P9F0 684 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 VPS52Q8N1B4 723 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 PLCB1Q9NQ66 1216 aa18.16■□□□□ 0.5
SH3RF1-201ENST00000284637 KRIT1O00522 736 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 ENC1O14682 589 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 SLC1A4P43007 532 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 APBA1Q02410 837 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 RAB17Q9H0T7 212 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 ADCY9O60503 1353 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 USP17L12C9JPN9 530 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 USP17L21D6R901 530 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 TRIML1Q8N9V2 468 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 HAUS7Q99871 368 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 DPH5Q9H2P9 285 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 STAP2Q9UGK3 403 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 ZMYM6O95789 1325 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 SMCO2A6NFE2 343 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 IFNL3Q8IZI9 196 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 CCDC24Q8N4L8 307 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 USH1GQ495M9 461 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 SLC35F6Q8N357 371 aa18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 UHMK1Q8TAS1 419 aaKnown RBP18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 SUDS3Q9H7L9 328 aaPredicted RBP18.15■□□□□ 0.5
SH3RF1-201ENST00000284637 CHUKO15111 745 aa18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 GNPATO15228 680 aa18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 BCRP11274 1271 aa18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 ZYXQ15942 572 aaKnown RBP18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 KCTD16Q68DU8 428 aa18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 TRIM4Q9C037 500 aa18.14■□□□□ 0.5
SH3RF1-201ENST00000284637 WDR62O43379 1518 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 SMIM24O75264 130 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 CLTAP09496 248 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 STX2P32856 288 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 TECP42680 631 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 MAP7Q14244 749 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 E2F5Q15329 346 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 DCUN1D2Q6PH85 259 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 ADAT2Q7Z6V5 191 aaKnown RBP18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 VCX3BQ9H321 246 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 CUL4AQ13619 759 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 RTEL1Q9NZ71 1219 aa18.14■□□□□ 0.49
SH3RF1-201ENST00000284637 DNMT1P26358 1616 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 342 ms