RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 CAVIN4Q5BKX8 364 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 TMTC3Q6ZXV5 915 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 SH3RF1Q7Z6J0 888 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 UBE4AQ14139 1066 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 PIK3AP1Q6ZUJ8 805 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 PTF1AQ7RTS3 328 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 IQCA1Q86XH1 822 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 TRIML1Q8N9V2 468 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 LINC00116Q8NCU8 138 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 NSUN4Q96CB9 384 aaKnown RBP16.94■□□□□ 0.3
CLN3-253ENST00000636977 BSDC1Q9NW68 430 aaPredicted RBP16.94■□□□□ 0.3
CLN3-253ENST00000636977 FAM53CQ9NYF3 392 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 CNTNAP5Q8WYK1 1306 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 A0A1B0GTH6 734 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 KDM4FA0A1W2PPD8 638 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 XBP1P17861 261 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 TTC38Q5R3I4 469 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 KRT222Q8N1A0 295 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 BRIP1Q9BX63 1249 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 DACH1Q9UI36 760 aa16.94■□□□□ 0.3
CLN3-253ENST00000636977 PPP1R3GB7ZBB8 358 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 CCP110O43303 1012 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 ZSCAN12O43309 604 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 RBL2Q08999 1139 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 KANK3Q6NY19 840 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 TXNRD3Q86VQ6 643 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 MTRQ99707 1265 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 XDHP47989 1333 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 SYNRGQ9UMZ2 1314 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 STX10O60499 249 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 MCM7P33993 719 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 TBC1D9BQ66K14 1250 aa16.93■□□□□ 0.3
CLN3-253ENST00000636977 SECISBP2LQ93073 1101 aaKnown RBP16.93■□□□□ 0.3
CLN3-253ENST00000636977 DCP1AQ9NPI6 582 aaPredicted RBP16.93■□□□□ 0.3
CLN3-253ENST00000636977 TADA3O75528 432 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 ERCC5P28715 1186 aaPredicted RBP16.92■□□□□ 0.3
CLN3-253ENST00000636977 MNS1Q8NEH6 495 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 UBXN4Q92575 508 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLN3-253ENST00000636977 FHOD1Q9Y613 1164 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 SEC31AO94979 1220 aaKnown RBP16.92■□□□□ 0.3
CLN3-253ENST00000636977 FGRP09769 529 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 RAD9BQ6WBX8 426 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 FCHSD1Q86WN1 690 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 SF3B3Q15393 1217 aaKnown RBP16.92■□□□□ 0.3
CLN3-253ENST00000636977 SPATA1Q5VX52 437 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 TRIM34Q9BYJ4 488 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 CTNND2Q9UQB3 1225 aa16.92■□□□□ 0.3
CLN3-253ENST00000636977 NUTM2BA6NNL0 878 aaPredicted RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 NUTM2EB1AL46 878 aaPredicted RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 CASQ1P31415 396 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 CCT6AP40227 531 aaKnown RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 IGSF22Q8N9C0 903 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 RASGRP4Q8TDF6 673 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 KIFC2Q96AC6 838 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 LZTFL1Q9NQ48 299 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 SRP68Q9UHB9 627 aaKnown RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 MAPK8IP1Q9UQF2 711 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 WNK3Q9BYP7 1800 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 FBXO33Q7Z6M2 555 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 GPKOWQ92917 476 aaPredicted RBP eCLIP16.91■□□□□ 0.3
CLN3-253ENST00000636977 RBM28Q9NW13 759 aaKnown RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 ADD3Q9UEY8 706 aaKnown RBP16.91■□□□□ 0.3
CLN3-253ENST00000636977 ZNF652Q9Y2D9 606 aa16.91■□□□□ 0.3
CLN3-253ENST00000636977 AKR1B15C9JRZ8 316 aaPredicted RBP16.9■□□□□ 0.3
CLN3-253ENST00000636977 TUBB4AP04350 444 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 USP17L8P0C7I0 530 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 NLRP5P59047 1200 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 ATP2C1P98194 919 aaPredicted RBP16.9■□□□□ 0.3
CLN3-253ENST00000636977 PPP2R5BQ15173 497 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 CDKAL1Q5VV42 579 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 MTMR7Q9Y216 660 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 RNF225M0QZC1 329 aaPredicted RBP16.9■□□□□ 0.3
CLN3-253ENST00000636977 ABL1P00519 1130 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 E2F4Q16254 413 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 RCSD1Q6JBY9 416 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 CREBRFQ8IUR6 639 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 FERMT2Q96AC1 680 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 A0A1B0GUL6 1792 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 LAMB2P55268 1798 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 FAM205AQ6ZU69 1335 aa16.9■□□□□ 0.3
CLN3-253ENST00000636977 PBX1P40424 430 aa16.89■□□□□ 0.3
CLN3-253ENST00000636977 CTCFLQ8NI51 663 aaPredicted RBP16.89■□□□□ 0.3
CLN3-253ENST00000636977 DDAH1O94760 285 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 SCG2P13521 617 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 CASP14P31944 242 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 FXR1P51114 621 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLN3-253ENST00000636977 MAP3K9P80192 1104 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 STAG2Q8N3U4 1231 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 ZSWIM4Q9H7M6 989 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 TFRCP02786 760 aaKnown RBP16.89■□□□□ 0.29
CLN3-253ENST00000636977 PNMA6AP0CW24 399 aaPredicted RBP16.89■□□□□ 0.29
CLN3-253ENST00000636977 DYNLL2Q96FJ2 89 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 BRMS1Q9HCU9 246 aa16.89■□□□□ 0.29
CLN3-253ENST00000636977 TSPY2A6NKD2 308 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 TYW1BQ6NUM6 668 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 PDXDC2PQ6P474 469 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 GSDMAQ96QA5 445 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 RREB1Q92766 1687 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 GYPCP04921 128 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 223.3 ms