RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CAMK4Q16566 473 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 AXDND1Q5T1B0 1012 aaPredicted RBP18.78■□□□□ 0.6
LDB3-208ENST00000623007 CDC42EP5Q6NZY7 148 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 RNF214Q8ND24 703 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 ANO10Q9NW15 660 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 FAM13BQ9NYF5 915 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 KCNJ14Q9UNX9 436 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 KIF13BQ9NQT8 1826 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 PSME4Q14997 1843 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 TRIM75PA6NK02 468 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 F8W031 263 aaPredicted RBP18.77■□□□□ 0.6
LDB3-208ENST00000623007 CHRNA5P30532 468 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 NLRP5P59047 1200 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 TGFB2P61812 414 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 ASPRV1Q53RT3 343 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 FERMT2Q96AC1 680 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 PYM1Q9BRP8 204 aaKnown RBP18.77■□□□□ 0.6
LDB3-208ENST00000623007 MYH8P13535 1937 aa18.77■□□□□ 0.6
LDB3-208ENST00000623007 PICALMQ13492 652 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 CMTR1Q8N1G2 835 aaKnown RBP18.76■□□□□ 0.59
LDB3-208ENST00000623007 DAGLBQ8NCG7 672 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 VPS54Q9P1Q0 977 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 PI4KBQ9UBF8 816 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 MAD2L2Q9UI95 211 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 PPIP5K2O43314 1243 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 PTPREP23469 700 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 SYKP43405 635 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 RESP18Q5W5W9 173 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 KANK3Q6NY19 840 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 OLFM4Q6UX06 510 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 FOXP4Q8IVH2 680 aaPredicted RBP18.76■□□□□ 0.59
LDB3-208ENST00000623007 GOLPH3LQ9H4A5 285 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 HDAC9Q9UKV0 1011 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 HPSEQ9Y251 543 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 MRVI1Q9Y6F6 885 aa18.76■□□□□ 0.59
LDB3-208ENST00000623007 ENTPD3O75355 529 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 ZNF202O95125 648 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 TTLL1O95922 423 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 SLC44A5Q8NCS7 719 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 MTMR4Q9NYA4 1195 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 CCDC39Q9UFE4 941 aa18.75■□□□□ 0.59
LDB3-208ENST00000623007 SEC63Q9UGP8 760 aaKnown RBP18.75■□□□□ 0.59
LDB3-208ENST00000623007 SRPRBQ9Y5M8 271 aaKnown RBP18.75■□□□□ 0.59
LDB3-208ENST00000623007 PFKFB1P16118 471 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 SCNN1DP51172 638 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 NDUFA8P51970 172 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 EVX2Q03828 476 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 CKAP2LQ8IYA6 745 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 CEP95Q96GE4 821 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 TRIM34Q9BYJ4 488 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 CABP5Q9NP86 173 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 TMOD2Q9NZR1 351 aa18.74■□□□□ 0.59
LDB3-208ENST00000623007 ZNF646O15015 1829 aaPredicted RBP18.74■□□□□ 0.59
LDB3-208ENST00000623007 IGKV6D-41A0A0C4DH26 115 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 A0A1B0GVL5 298 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 KLRF2D3W0D1 207 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 TPM3P06753 285 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 POLD1P28340 1107 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 GNA11P29992 359 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 AOC3Q16853 763 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 KIAA0825Q8IV33 1275 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 RRP36Q96EU6 259 aaKnown RBP18.73■□□□□ 0.59
LDB3-208ENST00000623007 USP25Q9UHP3 1055 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 SYNPO2Q9UMS6 1093 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 PCDHA4Q9UN74 947 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 ZNF165P49910 485 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 TOB1P50616 345 aaPredicted RBP18.73■□□□□ 0.59
LDB3-208ENST00000623007 RBM5P52756 815 aaKnown RBP eCLIP18.73■□□□□ 0.59
LDB3-208ENST00000623007 SLC4A8Q2Y0W8 1093 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 GPATCH4Q5T3I0 446 aaKnown RBP18.73■□□□□ 0.59
LDB3-208ENST00000623007 CEP57L1Q8IYX8 460 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 TNFRSF25Q93038 417 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 BARHL2Q9NY43 387 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 KIAA1468Q9P260 1216 aa18.73■□□□□ 0.59
LDB3-208ENST00000623007 ATRNL1Q5VV63 1379 aa18.72■□□□□ 0.59
LDB3-208ENST00000623007 MARCKSP29966 332 aaPredicted RBP18.72■□□□□ 0.59
LDB3-208ENST00000623007 NR5A1Q13285 461 aa18.72■□□□□ 0.59
LDB3-208ENST00000623007 ORC2Q13416 577 aaPredicted RBP18.72■□□□□ 0.59
LDB3-208ENST00000623007 ANO6Q4KMQ2 910 aa18.72■□□□□ 0.59
LDB3-208ENST00000623007 BLIDQ8IZY5 108 aa18.72■□□□□ 0.59
LDB3-208ENST00000623007 DDX4Q9NQI0 724 aaKnown RBP18.72■□□□□ 0.59
LDB3-208ENST00000623007 ESYT2A0FGR8 921 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 GOLGA6L6A8MZA4 724 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 GOLGA6L19H0YKK7 550 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 LAD1O00515 517 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 C21orf2O43822 256 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 ARL6IP4Q66PJ3 421 aaKnown RBP18.71■□□□□ 0.59
LDB3-208ENST00000623007 OGFOD1Q8N543 542 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 BPIFA3Q9BQP9 254 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 KCNH3Q9ULD8 1083 aa18.71■□□□□ 0.59
LDB3-208ENST00000623007 UBE2Q2LH0YL09 131 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 SNHG28P0DPA3 235 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 TTC38Q5R3I4 469 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 METTL16Q86W50 562 aaKnown RBP18.7■□□□□ 0.58
LDB3-208ENST00000623007 KANSL2Q9H9L4 492 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 C6orf50Q9HD87 102 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 PIM2Q9P1W9 311 aa18.7■□□□□ 0.58
LDB3-208ENST00000623007 FBXO2Q9UK22 296 aaPredicted RBP18.7■□□□□ 0.58
LDB3-208ENST00000623007 GREB1LQ9C091 1923 aaPredicted RBP18.7■□□□□ 0.58
LDB3-208ENST00000623007 VIL1P09327 827 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms