RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 WAPLQ7Z5K2 1190 aa5.57□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC65Q8IXS2 484 aa5.57□□□□□ -1.52
VPS13D-214ENST00000620676 EPN3Q9H201 632 aa5.57□□□□□ -1.52
VPS13D-214ENST00000620676 SAMSN1Q9NSI8 373 aaKnown RBP5.57□□□□□ -1.52
VPS13D-214ENST00000620676 INTS9Q9NV88 658 aaKnown RBP5.57□□□□□ -1.52
VPS13D-214ENST00000620676 PRXQ9BXM0 1461 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 PSMC1P62191 440 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC62Q6P9F0 684 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 UTS2BQ765I0 119 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 PLVAPQ9BX97 442 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 GJB4Q9NTQ9 266 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 BZW2Q9Y6E2 419 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 ZBBXA8MT70 800 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RPS6KA1Q15418 735 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 DCAF17Q5H9S7 520 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 OLFML1Q6UWY5 402 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 SPZ1Q9BXG8 430 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 TSC22D4Q9Y3Q8 395 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 POSTNQ15063 836 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 FBXO41Q8TF61 875 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 IWS1Q96ST2 819 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 NCAPD3P42695 1498 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 ATP2A2P16615 1042 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 FOXD4Q12950 439 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 MDH1BQ5I0G3 518 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RUFY4Q6ZNE9 571 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 U2AF1L4Q8WU68 220 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CUL5Q93034 780 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 HEXIM1O94992 359 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 MX2P20592 715 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 PSME1Q06323 249 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 GJC2Q5T442 439 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CATIPQ7Z7H3 387 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RMND1Q9NWS8 449 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 ANAPC4Q9UJX5 808 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 IQSEC3Q9UPP2 1182 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 BICRAQ9NZM4 1560 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 TRIM75PA6NK02 468 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RNF8O76064 485 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 SUN1O94901 812 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 KRT15P19012 456 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 MCMDC2Q4G0Z9 681 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 PARD3BQ8TEW8 1205 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 LRRC45Q96CN5 670 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CEP126Q9P2H0 1117 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 STAMBPO95630 424 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 TRAF1Q13077 416 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 DLGAP2Q9P1A6 1054 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 ATP8B1O43520 1251 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CASP1P29466 404 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 ASIC2Q16515 512 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CETN2P41208 172 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 USP4Q13107 963 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 GRAMD4Q6IC98 578 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CSGALNACT2Q8N6G5 542 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 LSM14BQ9BX40 385 aaKnown RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RWDD2BP57060 319 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC77Q9BR77 488 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 LRWD1Q9UFC0 647 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 S100BP04271 92 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-214ENST00000620676 KLHL29Q96CT2 875 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CENPKQ9BS16 269 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 CUL3Q13618 768 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 RMDN2Q96LZ7 410 aa5.56□□□□□ -1.52
VPS13D-214ENST00000620676 TPD52P55327 224 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NOA1Q8NC60 698 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 OR8K1Q8NGG5 319 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MYO1AQ9UBC5 1043 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NUB1Q9Y5A7 615 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC151A5D8V7 595 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 DPF2Q92785 391 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 IGF2BP3O00425 579 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PER1O15534 1290 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MAN1B1Q9UKM7 699 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 METTL24Q5JXM2 366 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ALS2CLQ60I27 953 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PEX26Q7Z412 305 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC110Q8TBZ0 833 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ADAM33Q9BZ11 813 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NUF2Q9BZD4 464 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PHAXQ9H814 394 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MRPL44Q9H9J2 332 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ASIC3Q9UHC3 531 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MCM8Q9UJA3 840 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 KDRP35968 1356 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 TMEM259Q4ZIN3 620 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NELFCDQ8IXH7 590 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PDCD7Q8N8D1 485 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SMCR8Q8TEV9 937 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 IQCGQ9H095 443 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SYNCQ9H7C4 482 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ACCSLQ4AC99 568 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 EFCAB2Q5VUJ9 269 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ZNF473Q8WTR7 871 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 EPSTI1Q96J88 318 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PGBD1Q96JS3 809 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SKOR1P84550 965 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PPIP5K1Q6PFW1 1433 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 VCX3BQ9H321 246 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms