RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 UBE2Q1Q7Z7E8 422 aa20.56■□□□□ 0.88
HMGN3-203ENST00000620514 SPICE1Q8N0Z3 855 aa20.56■□□□□ 0.88
HMGN3-203ENST00000620514 USP6NLQ92738 828 aa20.56■□□□□ 0.88
HMGN3-203ENST00000620514 GCC1Q96CN9 775 aa20.56■□□□□ 0.88
HMGN3-203ENST00000620514 TANGO6Q9C0B7 1094 aa20.56■□□□□ 0.88
HMGN3-203ENST00000620514 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.56■□□□□ 0.88
HMGN3-203ENST00000620514 PAK6Q9NQU5 681 aaPredicted RBP20.56■□□□□ 0.88
HMGN3-203ENST00000620514 ZBTB47Q9UFB7 747 aaPredicted RBP20.56■□□□□ 0.88
HMGN3-203ENST00000620514 EEF2P13639 858 aaKnown RBP20.55■□□□□ 0.88
HMGN3-203ENST00000620514 ATP2B2Q01814 1243 aa20.55■□□□□ 0.88
HMGN3-203ENST00000620514 COG2Q14746 738 aa20.55■□□□□ 0.88
HMGN3-203ENST00000620514 LRRFIP1Q32MZ4 808 aaKnown RBP20.55■□□□□ 0.88
HMGN3-203ENST00000620514 MORN1Q5T089 497 aa20.55■□□□□ 0.88
HMGN3-203ENST00000620514 SOCS4Q8WXH5 440 aa20.55■□□□□ 0.88
HMGN3-203ENST00000620514 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.55■□□□□ 0.88
HMGN3-203ENST00000620514 VCPKMTQ9H867 229 aa20.55■□□□□ 0.88
HMGN3-203ENST00000620514 APPP05067 770 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 GNAT2P19087 354 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 RASA1P20936 1047 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 TDO2P48775 406 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 CCNA1P78396 465 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 ZMYM1Q5SVZ6 1142 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 WDR78Q5VTH9 848 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 SH2D4AQ9H788 454 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 CWC22Q9HCG8 908 aaKnown RBP20.54■□□□□ 0.88
HMGN3-203ENST00000620514 ROBO3Q96MS0 1386 aa20.54■□□□□ 0.88
HMGN3-203ENST00000620514 RLFQ13129 1914 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 PATL2C9JE40 543 aaKnown RBP20.53■□□□□ 0.88
HMGN3-203ENST00000620514 FARP2O94887 1054 aaPredicted RBP20.53■□□□□ 0.88
HMGN3-203ENST00000620514 TFRCP02786 760 aaKnown RBP20.53■□□□□ 0.88
HMGN3-203ENST00000620514 XRCC5P13010 732 aaKnown RBP20.53■□□□□ 0.88
HMGN3-203ENST00000620514 CCL14Q16627 93 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 IFNL3Q8IZI9 196 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 EXOC6Q8TAG9 804 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 LPAR1Q92633 364 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 KANSL2Q9H9L4 492 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 HOXC10Q9NYD6 342 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 STAP2Q9UGK3 403 aa20.53■□□□□ 0.88
HMGN3-203ENST00000620514 DSG3P32926 999 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 RGS2P41220 211 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 PDE1AP54750 535 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 SAMD1Q6SPF0 538 aaPredicted RBP20.52■□□□□ 0.88
HMGN3-203ENST00000620514 CCDC129Q6ZRS4 1044 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 CRISPLD2Q9H0B8 497 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 MKNK2Q9HBH9 465 aa20.52■□□□□ 0.88
HMGN3-203ENST00000620514 RPTORQ8N122 1335 aa20.52■□□□□ 0.87
HMGN3-203ENST00000620514 GREB1LQ9C091 1923 aaPredicted RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 WDR46O15213 610 aaKnown RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 PRDM1O75626 825 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 FLOT1O75955 427 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 PRKAR2AP13861 404 aaKnown RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 ZKSCAN1P17029 563 aaPredicted RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 PTPREP23469 700 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 MAP2K5Q13163 448 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 MAP3K21Q5TCX8 1036 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 ATG4CQ96DT6 458 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 APBA2Q99767 749 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 MOV10L1Q9BXT6 1211 aaKnown RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 LNPKQ9C0E8 428 aa20.51■□□□□ 0.87
HMGN3-203ENST00000620514 HMX1Q9NP08 348 aaPredicted RBP20.51■□□□□ 0.87
HMGN3-203ENST00000620514 A0A0G2JMZ2 1700 aa20.5■□□□□ 0.87
HMGN3-203ENST00000620514 IGHDP01880 384 aa20.5■□□□□ 0.87
HMGN3-203ENST00000620514 AAMPQ13685 434 aa20.5■□□□□ 0.87
HMGN3-203ENST00000620514 SLC15A5A6NIM6 579 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 FOXP2O15409 715 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 RAD21O60216 631 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 CACNB2Q08289 660 aaPredicted RBP20.49■□□□□ 0.87
HMGN3-203ENST00000620514 B4GALNT3Q6L9W6 998 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 SMC5Q8IY18 1101 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 TRMT44Q8IYL2 757 aaKnown RBP20.49■□□□□ 0.87
HMGN3-203ENST00000620514 DPF3Q92784 378 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 EVI5LQ96CN4 794 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 NACAP1Q9BZK3 213 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 SPATC1LQ9H0A9 340 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 RWDD1Q9H446 243 aaPredicted RBP20.49■□□□□ 0.87
HMGN3-203ENST00000620514 FBXO28Q9NVF7 368 aa20.49■□□□□ 0.87
HMGN3-203ENST00000620514 H0YGN5 161 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 GRB14Q14449 540 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 FAM83BQ5T0W9 1011 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 NPLOC4Q8TAT6 608 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 DIS3LQ8TF46 1054 aaKnown RBP20.48■□□□□ 0.87
HMGN3-203ENST00000620514 NAPBQ9H115 298 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 GOPCQ9HD26 462 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 FLRT1Q9NZU1 646 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 IVNS1ABPQ9Y6Y0 642 aa20.48■□□□□ 0.87
HMGN3-203ENST00000620514 IGKV6D-41A0A0C4DH26 115 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 ERCC3P19447 782 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 PLS1Q14651 629 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 ZNF444Q8N0Y2 327 aaPredicted RBP20.47■□□□□ 0.87
HMGN3-203ENST00000620514 MB21D1Q8N884 522 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 NUP88Q99567 741 aaPredicted RBP20.47■□□□□ 0.87
HMGN3-203ENST00000620514 NYAP2Q9P242 653 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 PARP14Q460N5 1801 aa20.47■□□□□ 0.87
HMGN3-203ENST00000620514 SLC34A2O95436 690 aa20.46■□□□□ 0.87
HMGN3-203ENST00000620514 CCND3P30281 292 aaPredicted RBP20.46■□□□□ 0.87
HMGN3-203ENST00000620514 PPARAQ07869 468 aa20.46■□□□□ 0.87
HMGN3-203ENST00000620514 TMEM132BQ14DG7 1078 aa20.46■□□□□ 0.87
HMGN3-203ENST00000620514 VPS53Q5VIR6 699 aa20.46■□□□□ 0.87
HMGN3-203ENST00000620514 SHCBP1Q8NEM2 672 aa20.46■□□□□ 0.87
HMGN3-203ENST00000620514 PAWRQ96IZ0 340 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms