RNA–Protein interactions for RNA: ENST00000588745.5

SMAD4-205, Transcript of SMAD family member 4, humanhuman

TSL 5 BASIC

Gene SMAD4, Length 1,371 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-205ENST00000588745 TMEM39BQ9GZU3 492 aa13.22□□□□□ -0.29
SMAD4-205ENST00000588745 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.22□□□□□ -0.29
SMAD4-205ENST00000588745 GDPD2Q9HCC8 539 aa13.22□□□□□ -0.29
SMAD4-205ENST00000588745 GJB4Q9NTQ9 266 aa13.22□□□□□ -0.29
SMAD4-205ENST00000588745 RNF181Q9P0P0 153 aa13.22□□□□□ -0.29
SMAD4-205ENST00000588745 RBM27Q9P2N5 1060 aaKnown RBP13.22□□□□□ -0.29
SMAD4-205ENST00000588745 PALM3A6NDB9 673 aaPredicted RBP13.21□□□□□ -0.29
SMAD4-205ENST00000588745 H7C1D1 291 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 GDF11O95390 407 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 PKN1Q16512 942 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 CSPP1Q1MSJ5 1256 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 ABCB5Q2M3G0 1257 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 BRAPQ7Z569 592 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 LRRC47Q8N1G4 583 aaKnown RBP13.21□□□□□ -0.29
SMAD4-205ENST00000588745 LZTS2Q9BRK4 669 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 GPRC5DQ9NZD1 345 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 PGAP2Q9UHJ9 254 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 MTMR7Q9Y216 660 aa13.21□□□□□ -0.29
SMAD4-205ENST00000588745 KIF28PB7ZC32 967 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 TBC1D12O60347 775 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 PARP1P09874 1014 aaKnown RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 SNHG28P0DPA3 235 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 PDHBP11177 359 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 RASGRP2Q7LDG7 609 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 USP48Q86UV5 1035 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 CDAN1Q8IWY9 1227 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 STAG2Q8N3U4 1231 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 KANSL2Q9H9L4 492 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 NYAP2Q9P242 653 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 CLIP2Q9UDT6 1046 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 HACL1Q9UJ83 578 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 V9GY48 417 aaPredicted RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 ASTN2O75129 1339 aaPredicted RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 ELP1O95163 1332 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 MMP1P03956 469 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 XBP1P17861 261 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 ICA1Q05084 483 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 RASA3Q14644 834 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 RRP1BQ14684 758 aaKnown RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 SEPT2Q15019 361 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 SHROOM1Q2M3G4 852 aaPredicted RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 KLHL40Q2TBA0 621 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 ASPRV1Q53RT3 343 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 ATL3Q6DD88 541 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 TRPM4Q8TD43 1214 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 SPZ1Q9BXG8 430 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 CABP5Q9NP86 173 aa13.2□□□□□ -0.3
SMAD4-205ENST00000588745 DDX49Q9Y6V7 483 aaKnown RBP13.2□□□□□ -0.3
SMAD4-205ENST00000588745 hCG_1642624A0A1W2PR95 340 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 USP17L5A8MUK1 530 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 KLRF2D3W0D1 207 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 MBD3O95983 291 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 GH2P01242 217 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 GOLGA8HP0CJ92 632 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 SCG2P13521 617 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 EEF2P13639 858 aaKnown RBP13.19□□□□□ -0.3
SMAD4-205ENST00000588745 SMARCA1P28370 1054 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 ATP2B2Q01814 1243 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 MAP3K10Q02779 954 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 SAFBQ15424 915 aaKnown RBP eCLIP13.19□□□□□ -0.3
SMAD4-205ENST00000588745 PFKFB3Q16875 520 aaPredicted RBP13.19□□□□□ -0.3
SMAD4-205ENST00000588745 SLC35G1Q2M3R5 365 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 C9orf131Q5VYM1 1079 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 USP17L2Q6R6M4 530 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 MKL1Q969V6 931 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 TEPSINQ96N21 525 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
SMAD4-205ENST00000588745 SCAND2PQ9GZW5 306 aaPredicted RBP13.19□□□□□ -0.3
SMAD4-205ENST00000588745 VPS54Q9P1Q0 977 aa13.19□□□□□ -0.3
SMAD4-205ENST00000588745 ATAD5Q96QE3 1844 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 CYTH3O43739 400 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 U2AF2P26368 475 aaKnown RBP eCLIP13.18□□□□□ -0.32e-7■■■□□ 17.5
SMAD4-205ENST00000588745 JAG1P78504 1218 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 GNL2Q13823 731 aaKnown RBP13.18□□□□□ -0.3
SMAD4-205ENST00000588745 MYSM1Q5VVJ2 828 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 APOBEC3FQ8IUX4 373 aaKnown RBP13.18□□□□□ -0.3
SMAD4-205ENST00000588745 DIS3L2Q8IYB7 885 aaKnown RBP13.18□□□□□ -0.3
SMAD4-205ENST00000588745 GPT2Q8TD30 523 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 SHISA4Q96DD7 197 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 SPATA32Q96LK8 384 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 CFAP45Q9UL16 551 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 ZBTB21Q9ULJ3 1066 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 SYNPO2Q9UMS6 1093 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 KCNJ14Q9UNX9 436 aa13.18□□□□□ -0.3
SMAD4-205ENST00000588745 FRMPD2Q68DX3 1309 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 GADD45BO75293 160 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 DDNO94850 711 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 UBE2HP62256 183 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 ZNF543Q08ER8 600 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 DCAF4Q8WV16 495 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 LEO1Q8WVC0 666 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 USP28Q96RU2 1077 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 PHF20Q9BVI0 1012 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 DEFB129Q9H1M3 183 aa13.17□□□□□ -0.3
SMAD4-205ENST00000588745 FOXP1Q9H334 677 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 TFIP11Q9UBB9 837 aaKnown RBP13.17□□□□□ -0.3
SMAD4-205ENST00000588745 LMOD1P29536 600 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-205ENST00000588745 EPS15P42566 896 aa13.16□□□□□ -0.3
SMAD4-205ENST00000588745 GPATCH4Q5T3I0 446 aaKnown RBP13.16□□□□□ -0.3
SMAD4-205ENST00000588745 ANGEL2Q5VTE6 544 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms