RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ANXA13P27216 316 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PAFAH1B1P43034 410 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PLCD1P51178 756 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 MAP2K1Q02750 393 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SPAG1Q07617 926 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PRPF4BQ13523 1007 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SPDYE2Q495Y8 402 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 TNNI3KQ59H18 835 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 MAEAQ7L5Y9 396 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 LUZP1Q86V48 1076 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SP8Q8IXZ3 490 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ANKRD13AQ8IZ07 590 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ZNF830Q96NB3 372 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 NUP88Q99567 741 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ZKSCAN3Q9BRR0 538 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 TEKT3Q9BXF9 490 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 AAASQ9NRG9 546 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ANO10Q9NW15 660 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 TXNDC16Q9P2K2 825 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SLC12A6Q9UHW9 1150 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ATP8B3O60423 1300 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 USP6P35125 1406 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ZCCHC11Q5TAX3 1644 aaKnown RBP3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 PRAMEF22A3QJZ6 481 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 STK10O94804 968 aaKnown RBP3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 FDX1P10109 184 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 RARBP10826 455 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 TRIM27P14373 513 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 CYP2B6P20813 491 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 CCND2P30279 289 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 EIF4A1P60842 406 aaKnown RBP3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 PSMD2Q13200 908 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 MIS18BP1Q6P0N0 1132 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 SPICE1Q8N0Z3 855 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 PGBD3Q8N328 593 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 IPO4Q8TEX9 1081 aaKnown RBP3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 NLRP7Q8WX94 980 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 CACYBPQ9HB71 228 aaKnown RBP3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 IRAK4Q9NWZ3 460 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 ODF2LQ9ULJ1 636 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 TRIM17Q9Y577 477 aa3.28□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC171Q6TFL3 1326 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 SIGLEC1Q9BZZ2 1709 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 INO80B-WBP1J3KQ70 363 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GPAA1O43292 621 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 AKR1B10O60218 316 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 SORBS3O60504 671 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GDF11O95390 407 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC175P0C221 793 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 EPB41P11171 864 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT5P13647 590 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 IGFBP4P22692 258 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MCM7P33993 719 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 NNMTP40261 264 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LIG4P49917 911 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GTF2A2P52657 109 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA8FQ08AF8 430 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA8DPQ0D2H9 430 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 SPP2Q13103 211 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TTLL4Q14679 1199 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TTC22Q5TAA0 569 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 BARGINQ6ZT62 677 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PLA2G4DQ86XP0 818 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 REXO1Q8N1G1 1221 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 FSIP1Q8NA03 581 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RDH13Q8NBN7 331 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MMS19Q96T76 1030 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MMP19Q99542 508 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 DBNDD2Q9BQY9 259 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MIS12Q9H081 205 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GBP3Q9H0R5 595 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PSTPIP2Q9H939 334 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ADARB2Q9NS39 739 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RAB23Q9ULC3 237 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TPCN1Q9ULQ1 816 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 FNDC3AQ9Y2H6 1198 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RBM8AQ9Y5S9 174 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF123Q5XPI4 1314 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RICTORQ6R327 1708 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 BICDL2A1A5D9 508 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LRRIQ4A6NIV6 560 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L15C9J2P7 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L13C9JLJ4 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L11C9JVI0 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L18D6R9N7 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L22D6RA61 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L17D6RBQ6 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L19D6RCP7 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L20D6RJB6 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP2A1O14983 1001 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM191BP0C7N4 346 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TNNI1P19237 187 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ARID4AP29374 1257 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GJC1P36383 396 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PPP1R2P41236 205 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TXKP42681 527 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RECQLP46063 649 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D8BQ0IIM8 1120 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 USP17L24Q0WX57 530 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PLCB4Q15147 1175 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms