RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SWAP70Q9UH65 585 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 COG6Q9Y2V7 657 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 IGHA2P01877 340 aa25.47■■□□□ 1.67
VPS53-216ENST00000574029 TMEM179Q6ZVK1 233 aa25.47■■□□□ 1.67
VPS53-216ENST00000574029 SLC44A5Q8NCS7 719 aa25.47■■□□□ 1.67
VPS53-216ENST00000574029 PAG1Q9NWQ8 432 aa25.47■■□□□ 1.67
VPS53-216ENST00000574029 ADD2P35612 726 aa25.46■■□□□ 1.67
VPS53-216ENST00000574029 ATP2B2Q01814 1243 aa25.46■■□□□ 1.67
VPS53-216ENST00000574029 LRRC26Q2I0M4 334 aa25.46■■□□□ 1.67
VPS53-216ENST00000574029 MOV10L1Q9BXT6 1211 aaKnown RBP25.46■■□□□ 1.67
VPS53-216ENST00000574029 DDX20Q9UHI6 824 aaKnown RBP25.46■■□□□ 1.67
VPS53-216ENST00000574029 BAZ2AQ9UIF9 1905 aaKnown RBP25.45■■□□□ 1.67
VPS53-216ENST00000574029 ATP5JP18859 108 aa25.45■■□□□ 1.66
VPS53-216ENST00000574029 KIAA1755Q5JYT7 1200 aa25.45■■□□□ 1.66
VPS53-216ENST00000574029 DYNLL2Q96FJ2 89 aa25.45■■□□□ 1.66
VPS53-216ENST00000574029 BOLA2Q9H3K6 86 aa25.45■■□□□ 1.66
VPS53-216ENST00000574029 ATP8A2Q9NTI2 1148 aa25.45■■□□□ 1.66
VPS53-216ENST00000574029 MYH7P12883 1935 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 PRKAB2O43741 272 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 STRNO43815 780 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 MSCO60682 206 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 MBD4O95243 580 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 LRIT3Q3SXY7 679 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 SLFNL1Q499Z3 407 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 GPR153Q6NV75 609 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 SIAH1Q8IUQ4 282 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 SHCBP1Q8NEM2 672 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 TANGO6Q9C0B7 1094 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 SPATC1LQ9H0A9 340 aa25.44■■□□□ 1.66
VPS53-216ENST00000574029 PARP14Q460N5 1801 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 CYP2C19P33261 490 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 TDHQ8IZJ6 230 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 TRPV1Q8NER1 839 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 LPAR1Q92633 364 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 HAUS7Q99871 368 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 BCL11AQ9H165 835 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 CHMP4BQ9H444 224 aaKnown RBP25.43■■□□□ 1.66
VPS53-216ENST00000574029 TMX2Q9Y320 296 aa25.43■■□□□ 1.66
VPS53-216ENST00000574029 AKR1B1P15121 316 aa25.42■■□□□ 1.66
VPS53-216ENST00000574029 DSG3P32926 999 aa25.42■■□□□ 1.66
VPS53-216ENST00000574029 OLFML2BQ68BL8 750 aa25.42■■□□□ 1.66
VPS53-216ENST00000574029 MB21D1Q8N884 522 aa25.42■■□□□ 1.66
VPS53-216ENST00000574029 UBE2OQ9C0C9 1292 aaKnown RBP25.42■■□□□ 1.66
VPS53-216ENST00000574029 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.42■■□□□ 1.663e-7■■■■□ 22.8
VPS53-216ENST00000574029 ARHGEF10LQ9HCE6 1279 aa25.42■■□□□ 1.66
VPS53-216ENST00000574029 CYBAP13498 195 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 ERCC3P19447 782 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 ADORA2AP29274 412 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 CNGA1P29973 690 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 C12orf60Q5U649 245 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 DPP9Q86TI2 863 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 CLEC10AQ8IUN9 316 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 CCDC17Q96LX7 622 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 SENP6Q9GZR1 1112 aaPredicted RBP25.41■■□□□ 1.66
VPS53-216ENST00000574029 SH2D4AQ9H788 454 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 LAMA3Q16787 3333 aa25.41■■□□□ 1.66
VPS53-216ENST00000574029 ICA1Q05084 483 aa25.4■■□□□ 1.66
VPS53-216ENST00000574029 UBE3CQ15386 1083 aa25.4■■□□□ 1.66
VPS53-216ENST00000574029 VCPKMTQ9H867 229 aa25.4■■□□□ 1.66
VPS53-216ENST00000574029 SMIM22K7EJ46 135 aa25.39■■□□□ 1.66
VPS53-216ENST00000574029 DNM1LO00429 736 aa25.39■■□□□ 1.66
VPS53-216ENST00000574029 CHGBP05060 677 aa25.39■■□□□ 1.66
VPS53-216ENST00000574029 CDK8P49336 464 aa25.39■■□□□ 1.66
VPS53-216ENST00000574029 MROH8Q9H579 483 aa25.39■■□□□ 1.66
VPS53-216ENST00000574029 CYP2D7A0A087X1C5 515 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 USP17L12C9JPN9 530 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 USP17L21D6R901 530 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 COBLO75128 1261 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 FLOT1O75955 427 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 C16orf86Q6ZW13 317 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 AMOTL1Q8IY63 956 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 ABRAQ8N0Z2 381 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 SPICE1Q8N0Z3 855 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 ATG4CQ96DT6 458 aa25.38■■□□□ 1.65
VPS53-216ENST00000574029 WDR46O15213 610 aaKnown RBP25.37■■□□□ 1.65
VPS53-216ENST00000574029 COL11A1P12107 1806 aaPredicted RBP25.36■■□□□ 1.65
VPS53-216ENST00000574029 PLS1Q14651 629 aa25.36■■□□□ 1.65
VPS53-216ENST00000574029 SLC5A4Q9NY91 659 aa25.36■■□□□ 1.65
VPS53-216ENST00000574029 ADAMTS5Q9UNA0 930 aa25.36■■□□□ 1.65
VPS53-216ENST00000574029 SLC4A4Q9Y6R1 1079 aa25.36■■□□□ 1.65
VPS53-216ENST00000574029 MDM2Q00987 491 aaPredicted RBP25.35■■□□□ 1.65
VPS53-216ENST00000574029 ZSCAN25Q6NSZ9 544 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 NCAPG2Q86XI2 1143 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 DEFB123Q8N688 67 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 DDRGK1Q96HY6 314 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 LRRCC1Q9C099 1032 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 PUS7LQ9H0K6 701 aaKnown RBP25.35■■□□□ 1.65
VPS53-216ENST00000574029 RCAN3Q9UKA8 241 aa25.35■■□□□ 1.65
VPS53-216ENST00000574029 ZNFX1Q9P2E3 1918 aaKnown RBP25.35■■□□□ 1.65
VPS53-216ENST00000574029 SEPT4O43236 478 aa25.34■■□□□ 1.65
VPS53-216ENST00000574029 EEF2P13639 858 aaKnown RBP25.34■■□□□ 1.65
VPS53-216ENST00000574029 TMEM132BQ14DG7 1078 aa25.34■■□□□ 1.65
VPS53-216ENST00000574029 CTR9Q6PD62 1173 aa25.34■■□□□ 1.65
VPS53-216ENST00000574029 ARRDC4Q8NCT1 418 aa25.34■■□□□ 1.65
VPS53-216ENST00000574029 KANSL2Q9H9L4 492 aa25.34■■□□□ 1.65
VPS53-216ENST00000574029 GREB1LQ9C091 1923 aaPredicted RBP25.33■■□□□ 1.65
VPS53-216ENST00000574029 ATN1P54259 1190 aaPredicted RBP25.33■■□□□ 1.65
VPS53-216ENST00000574029 GJC2Q5T442 439 aaPredicted RBP25.33■■□□□ 1.65
VPS53-216ENST00000574029 SLC17A8Q8NDX2 589 aa25.33■■□□□ 1.65
VPS53-216ENST00000574029 MAML3Q96JK9 1138 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms