RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CRNKL1Q9BZJ0 848 aaKnown RBP25.95■■□□□ 1.74
VPS53-211ENST00000571805 FAM47AQ5JRC9 791 aa25.94■■□□□ 1.74
VPS53-211ENST00000571805 UTP14CQ5TAP6 766 aaKnown RBP25.94■■□□□ 1.74
VPS53-211ENST00000571805 SPATA1Q5VX52 437 aa25.94■■□□□ 1.74
VPS53-211ENST00000571805 ATP8A2Q9NTI2 1148 aa25.94■■□□□ 1.74
VPS53-211ENST00000571805 HIBADHP31937 336 aaKnown RBP25.93■■□□□ 1.74
VPS53-211ENST00000571805 PTGDRQ13258 359 aa25.93■■□□□ 1.74
VPS53-211ENST00000571805 CTCFLQ8NI51 663 aaPredicted RBP25.93■■□□□ 1.74
VPS53-211ENST00000571805 GSDMAQ96QA5 445 aa25.93■■□□□ 1.74
VPS53-211ENST00000571805 TFCP2L1Q9NZI6 479 aa25.93■■□□□ 1.74
VPS53-211ENST00000571805 SBK1Q52WX2 424 aa25.93■■□□□ 1.74
VPS53-211ENST00000571805 BAZ2BQ9UIF8 2168 aaKnown RBP25.93■■□□□ 1.74
VPS53-211ENST00000571805 KIAA1551Q9HCM1 1747 aa25.93■■□□□ 1.74
VPS53-211ENST00000571805 CYP2D6P10635 497 aa25.92■■□□□ 1.74
VPS53-211ENST00000571805 PRDX5P30044 214 aa25.92■■□□□ 1.74
VPS53-211ENST00000571805 NPHP1O15259 732 aa25.92■■□□□ 1.74
VPS53-211ENST00000571805 SCG2P13521 617 aa25.92■■□□□ 1.74
VPS53-211ENST00000571805 CNTNAP4Q9C0A0 1308 aa25.92■■□□□ 1.74
VPS53-211ENST00000571805 PPP1R3GB7ZBB8 358 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 VEGFAP15692 232 aaPredicted RBP25.91■■□□□ 1.74
VPS53-211ENST00000571805 H2AFXP16104 143 aaPredicted RBP25.91■■□□□ 1.74
VPS53-211ENST00000571805 FAM53CQ9NYF3 392 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 TEX33O43247 280 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 CDKAL1Q5VV42 579 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 RCSD1Q6JBY9 416 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 TOGARAM2Q6ZUX3 1019 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 GTPBP4Q9BZE4 634 aaKnown RBP25.91■■□□□ 1.74
VPS53-211ENST00000571805 ARPP21Q9UBL0 812 aaPredicted RBP25.91■■□□□ 1.74
VPS53-211ENST00000571805 PARP3Q9Y6F1 533 aa25.91■■□□□ 1.74
VPS53-211ENST00000571805 ADAMTS3O15072 1205 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 E2F4Q16254 413 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 PFKFB3Q16875 520 aaPredicted RBP25.9■■□□□ 1.74
VPS53-211ENST00000571805 NLRP3Q96P20 1036 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 ANKRD2Q9GZV1 360 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 STX17P56962 302 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 SYNRGQ9UMZ2 1314 aa25.9■■□□□ 1.74
VPS53-211ENST00000571805 CCDC88AQ3V6T2 1871 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 TRAPPC10P48553 1259 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 KLHL10Q6JEL2 608 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 NYXQ9GZU5 481 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 ZNF446Q9NWS9 450 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 MAST2Q6P0Q8 1798 aa25.89■■□□□ 1.74
VPS53-211ENST00000571805 GOLGA6L9A6NEM1 432 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 PBX1P40424 430 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 NLRP5P59047 1200 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 IL17AQ16552 155 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 PIK3AP1Q6ZUJ8 805 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 ADD3Q9UEY8 706 aaKnown RBP25.89■■□□□ 1.73
VPS53-211ENST00000571805 NARFQ9UHQ1 456 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 XDHP47989 1333 aa25.89■■□□□ 1.73
VPS53-211ENST00000571805 NUTM2BA6NNL0 878 aaPredicted RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 NUTM2EB1AL46 878 aaPredicted RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 TXNRD3Q86VQ6 643 aa25.88■■□□□ 1.73
VPS53-211ENST00000571805 SMYD4Q8IYR2 804 aaPredicted RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 SRRTQ9BXP5 876 aaKnown RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 URI1O94763 535 aaPredicted RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 SRP68Q9UHB9 627 aaKnown RBP25.88■■□□□ 1.73
VPS53-211ENST00000571805 IRS2Q9Y4H2 1338 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 TMED8Q6PL24 325 aaPredicted RBP25.87■■□□□ 1.73
VPS53-211ENST00000571805 PANX2Q96RD6 677 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 SETDB2Q96T68 719 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 COL24A1Q17RW2 1714 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 TSPY2A6NKD2 308 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 AKR1B15C9JRZ8 316 aaPredicted RBP25.87■■□□□ 1.73
VPS53-211ENST00000571805 PDXDC2PQ6P474 469 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 IQUBQ8NA54 791 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 STAMQ92783 540 aa25.87■■□□□ 1.73
VPS53-211ENST00000571805 NBPF5PQ86XG9 351 aaPredicted RBP25.86■■□□□ 1.73
VPS53-211ENST00000571805 WDR24Q96S15 920 aa25.86■■□□□ 1.73
VPS53-211ENST00000571805 MTRQ99707 1265 aa25.86■■□□□ 1.73
VPS53-211ENST00000571805 ZBTB22O15209 634 aa25.85■■□□□ 1.73
VPS53-211ENST00000571805 TM4SF1P30408 202 aa25.85■■□□□ 1.73
VPS53-211ENST00000571805 FAM177A1Q8N128 213 aaPredicted RBP25.85■■□□□ 1.73
VPS53-211ENST00000571805 ARHGAP29Q52LW3 1261 aa25.85■■□□□ 1.73
VPS53-211ENST00000571805 CCDC24Q8N4L8 307 aa25.85■■□□□ 1.73
VPS53-211ENST00000571805 C4orf32Q8N8J7 132 aa25.85■■□□□ 1.73
VPS53-211ENST00000571805 MKRN1Q9UHC7 482 aaKnown RBP25.85■■□□□ 1.73
VPS53-211ENST00000571805 TADA3O75528 432 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 USP17L8P0C7I0 530 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 MCM7P33993 719 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 RBL2Q08999 1139 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 PTF1AQ7RTS3 328 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 CTAGE1Q96RT6 745 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 MCM9Q9NXL9 1143 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 JAG2Q9Y219 1238 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 RPS6KA4O75676 772 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 GNG11P61952 73 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 MTF1Q14872 753 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 RC3H1Q5TC82 1133 aaKnown RBP25.84■■□□□ 1.73
VPS53-211ENST00000571805 IGSF22Q8N9C0 903 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 BLZF1Q9H2G9 400 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 IL17RBQ9NRM6 502 aa25.84■■□□□ 1.73
VPS53-211ENST00000571805 KIF5BP33176 963 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 MAP3K9P80192 1104 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 KRT222Q8N1A0 295 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 DESI2Q9BSY9 194 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 CARD6Q9BX69 1037 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 CASQ1P31415 396 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 FAM98CQ17RN3 349 aaKnown RBP25.83■■□□□ 1.73
VPS53-211ENST00000571805 C12orf60Q5U649 245 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms