RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 VAT1LQ9HCJ6 419 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 RTEL1Q9NZ71 1219 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 PI4KBQ9UBF8 816 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 CLIP2Q9UDT6 1046 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 FAM198AQ9UFP1 575 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 FOCADQ5VW36 1801 aa8.15□□□□□ -1.1
SMG1-215ENST00000568239 TOP1P11387 765 aaKnown RBP8.15□□□□□ -1.11
SMG1-215ENST00000568239 HOMER1Q86YM7 354 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 LINC00301Q8NCQ3 95 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 OXER1Q8TDS5 423 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 NUP62CLQ9H1M0 184 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 DHX36Q9H2U1 1008 aaKnown RBP8.15□□□□□ -1.11
SMG1-215ENST00000568239 POLR3EQ9NVU0 708 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 SWAP70Q9UH65 585 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 MAD2L2Q9UI95 211 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 PCDHA7Q9UN72 937 aa8.15□□□□□ -1.11
SMG1-215ENST00000568239 MYO3BQ8WXR4 1341 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 VIL1P09327 827 aaKnown RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 PARP1P09874 1014 aaKnown RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 SCG2P13521 617 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 VEGFAP15692 232 aaPredicted RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 U2AF2P26368 475 aaKnown RBP eCLIP8.14□□□□□ -1.113e-6■□□□□ 9.8
SMG1-215ENST00000568239 SHMT1P34896 483 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 GNAQP50148 359 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 NLRP5P59047 1200 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 CXCL9Q07325 125 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 RBM26Q5T8P6 1007 aaKnown RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 CCDC73Q6ZRK6 1079 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 CKAP2LQ8IYA6 745 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 KCNG4Q8TDN1 519 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 ANKS1AQ92625 1134 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 GPKOWQ92917 476 aaPredicted RBP eCLIP8.14□□□□□ -1.11
SMG1-215ENST00000568239 IDI2Q9BXS1 227 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 TNMDQ9H2S6 317 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 TSPY26PQ9H489 355 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 BRMS1Q9HCU9 246 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 CABP5Q9NP86 173 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 MTMR4Q9NYA4 1195 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 FRMPD2Q68DX3 1309 aaPredicted RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 KLRF2D3W0D1 207 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 KRT2P35908 639 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 NASPP49321 788 aaPredicted RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 GRM4Q14833 912 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 FSIP1Q8NA03 581 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 CSRNP1Q96S65 589 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 RBSNQ9H1K0 784 aa8.14□□□□□ -1.11
SMG1-215ENST00000568239 FOXP1Q9H334 677 aaPredicted RBP8.14□□□□□ -1.11
SMG1-215ENST00000568239 A0A1B0GVL5 298 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 SPDYE2BA6NHP3 402 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 USP17L5A8MUK1 530 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 LETM1O95202 739 aaPredicted RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 YEATS4O95619 227 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 TTLL1O95922 423 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 SPDYE6P0CI01 402 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 CERKLQ49MI3 558 aaPredicted RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 CIAPIN1Q6FI81 312 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 SH3BP5LQ7L8J4 393 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 HEATR3Q7Z4Q2 680 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 UBA5Q9GZZ9 404 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 COL4A5P29400 1685 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 GDF11O95390 407 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 PFKFB3Q16875 520 aaPredicted RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 SHROOM1Q2M3G4 852 aaPredicted RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 ANP32BQ92688 251 aaKnown RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 SHISA4Q96DD7 197 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 PHF20Q9BVI0 1012 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 DNAJC18Q9H819 358 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 SCAF8Q9UPN6 1271 aaKnown RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 CD2APQ9Y5K6 639 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 KIF13BQ9NQT8 1826 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 NFKBIEO00221 500 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 CYTH3O43739 400 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 RASSF7Q02833 373 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 SLC39A14Q15043 492 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 MAP3K11Q16584 847 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 ADALQ6DHV7 355 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 RGS22Q8NE09 1264 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 NLGN2Q8NFZ4 835 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 VPS33BQ9H267 617 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 GOLPH3LQ9H4A5 285 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 GPCPD1Q9NPB8 672 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 DDX19AQ9NUU7 478 aaKnown RBP8.13□□□□□ -1.11
SMG1-215ENST00000568239 GJA3Q9Y6H8 435 aa8.13□□□□□ -1.11
SMG1-215ENST00000568239 PALM3A6NDB9 673 aaPredicted RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 FAM205CA6NFA0 338 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 MYO1BO43795 1136 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 KINO60870 393 aaKnown RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 PDHBP11177 359 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 CCDC96Q2M329 555 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 RILPL1Q5EBL4 403 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 FOXP4Q8IVH2 680 aaPredicted RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 JMYQ8N9B5 988 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 MRPS27Q92552 414 aaKnown RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 MAP3K14Q99558 947 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 EHD4Q9H223 541 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 ZNF70Q9UC06 446 aaPredicted RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 SEC63Q9UGP8 760 aaKnown RBP8.12□□□□□ -1.11
SMG1-215ENST00000568239 SHTN1A0MZ66 631 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 PTGER2P43116 358 aa8.12□□□□□ -1.11
SMG1-215ENST00000568239 TOB1P50616 345 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms