RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SULF1Q8IWU6 871 aa35.57■■■■□ 3.28
CTCF-203ENST00000566078 SLC26A6Q9BXS9 759 aa35.57■■■■□ 3.28
CTCF-203ENST00000566078 STK36Q9NRP7 1315 aa35.56■■■■□ 3.28
CTCF-203ENST00000566078 PHF20L1A8MW92 1017 aa35.56■■■■□ 3.28
CTCF-203ENST00000566078 BRD1O95696 1058 aa35.56■■■■□ 3.28
CTCF-203ENST00000566078 RASGRP2Q7LDG7 609 aa35.56■■■■□ 3.28
CTCF-203ENST00000566078 WDR33Q9C0J8 1336 aaKnown RBP35.55■■■■□ 3.28
CTCF-203ENST00000566078 ADM5C9JUS6 153 aa35.55■■■■□ 3.28
CTCF-203ENST00000566078 FMNL1O95466 1100 aaPredicted RBP35.55■■■■□ 3.28
CTCF-203ENST00000566078 SSRP1Q08945 709 aaKnown RBP35.55■■■■□ 3.28
CTCF-203ENST00000566078 EAPPQ56P03 285 aaPredicted RBP35.55■■■■□ 3.28
CTCF-203ENST00000566078 CCDC82Q8N4S0 544 aa35.55■■■■□ 3.28
CTCF-203ENST00000566078 ZNF341Q9BYN7 854 aa35.55■■■■□ 3.28
CTCF-203ENST00000566078 OTOFQ9HC10 1997 aa35.55■■■■□ 3.28
CTCF-203ENST00000566078 MYH15Q9Y2K3 1946 aa35.55■■■■□ 3.28
CTCF-203ENST00000566078 VPS37CA5D8V6 355 aaPredicted RBP35.54■■■■□ 3.28
CTCF-203ENST00000566078 FOXD4L5Q5VV16 416 aaPredicted RBP35.54■■■■□ 3.28
CTCF-203ENST00000566078 NBPF11Q86T75 865 aa35.54■■■■□ 3.28
CTCF-203ENST00000566078 ZC3H15Q8WU90 426 aaKnown RBP35.54■■■■□ 3.28
CTCF-203ENST00000566078 FOXD4L4Q8WXT5 416 aaPredicted RBP35.54■■■■□ 3.28
CTCF-203ENST00000566078 MAD2L2Q9UI95 211 aa35.54■■■■□ 3.28
CTCF-203ENST00000566078 TRIM22Q8IYM9 498 aa35.54■■■■□ 3.28
CTCF-203ENST00000566078 PAPPA2Q9BXP8 1791 aa35.53■■■■□ 3.28
CTCF-203ENST00000566078 FOSBP53539 338 aa35.53■■■■□ 3.28
CTCF-203ENST00000566078 SIAH1Q8IUQ4 282 aa35.53■■■■□ 3.28
CTCF-203ENST00000566078 TNPO1Q92973 898 aaKnown RBP35.53■■■■□ 3.28
CTCF-203ENST00000566078 MKL1Q969V6 931 aa35.53■■■■□ 3.28
CTCF-203ENST00000566078 PARP1P09874 1014 aaKnown RBP35.52■■■■□ 3.28
CTCF-203ENST00000566078 KRT26Q7Z3Y9 468 aa35.52■■■■□ 3.28
CTCF-203ENST00000566078 STAG2Q8N3U4 1231 aa35.52■■■■□ 3.28
CTCF-203ENST00000566078 MTMR6Q9Y217 621 aa35.52■■■■□ 3.28
CTCF-203ENST00000566078 CNTNAP5Q8WYK1 1306 aa35.52■■■■□ 3.28
CTCF-203ENST00000566078 USP17L5A8MUK1 530 aa35.51■■■■□ 3.28
CTCF-203ENST00000566078 PDHBP11177 359 aa35.51■■■■□ 3.28
CTCF-203ENST00000566078 FUT2Q10981 343 aa35.51■■■■□ 3.28
CTCF-203ENST00000566078 SUPT20HL1Q3ZLR7 823 aa35.51■■■■□ 3.28
CTCF-203ENST00000566078 PNMA8AQ86V59 439 aaPredicted RBP35.51■■■■□ 3.28
CTCF-203ENST00000566078 SRBD1Q8N5C6 995 aaKnown RBP35.51■■■■□ 3.28
CTCF-203ENST00000566078 FRMD4AQ9P2Q2 1039 aaPredicted RBP35.51■■■■□ 3.28
CTCF-203ENST00000566078 PALM3A6NDB9 673 aaPredicted RBP35.5■■■■□ 3.27
CTCF-203ENST00000566078 ASNSP08243 561 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 PDIA4P13667 645 aaKnown RBP35.5■■■■□ 3.27
CTCF-203ENST00000566078 GNAQP50148 359 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 PHIPQ8WWQ0 1821 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 GOLGA8HP0CJ92 632 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 ZSCAN22P10073 491 aaPredicted RBP35.5■■■■□ 3.27
CTCF-203ENST00000566078 USP17L2Q6R6M4 530 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 RNF26Q9BY78 433 aaPredicted RBP35.5■■■■□ 3.27
CTCF-203ENST00000566078 ARHGEF10LQ9HCE6 1279 aa35.5■■■■□ 3.27
CTCF-203ENST00000566078 TCHHQ07283 1943 aa35.49■■■■□ 3.27
CTCF-203ENST00000566078 H3BQV1 296 aa35.49■■■■□ 3.27
CTCF-203ENST00000566078 IFFO2Q5TF58 517 aa35.49■■■■□ 3.27
CTCF-203ENST00000566078 DLK2Q6UY11 383 aa35.49■■■■□ 3.27
CTCF-203ENST00000566078 CTNND1O60716 968 aaKnown RBP35.48■■■■□ 3.27
CTCF-203ENST00000566078 SNHG28P0DPA3 235 aa35.48■■■■□ 3.27
CTCF-203ENST00000566078 CDC37L1Q7L3B6 337 aa35.48■■■■□ 3.27
CTCF-203ENST00000566078 ALG1Q9BT22 464 aa35.48■■■■□ 3.27
CTCF-203ENST00000566078 UBE2Q2LH0YL09 131 aa35.47■■■■□ 3.27
CTCF-203ENST00000566078 DEXIO95424 95 aa35.47■■■■□ 3.27
CTCF-203ENST00000566078 AKAP17AQ02040 695 aaKnown RBP35.47■■■■□ 3.27
CTCF-203ENST00000566078 WASF1Q92558 559 aa35.47■■■■□ 3.27
CTCF-203ENST00000566078 ZNF112Q9UJU3 913 aa35.47■■■■□ 3.27
CTCF-203ENST00000566078 FZD1Q9UP38 647 aa35.47■■■■□ 3.27
CTCF-203ENST00000566078 FRMPD2Q68DX3 1309 aaPredicted RBP35.47■■■■□ 3.27
CTCF-203ENST00000566078 RAD21O60216 631 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 INPP5BP32019 993 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 ASPRV1Q53RT3 343 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 C8orf76Q96K31 380 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 AIFM3Q96NN9 605 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 WRNIP1Q96S55 665 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 LZTS2Q9BRK4 669 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 GINM1Q9NU53 330 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 KLRF2D3W0D1 207 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 PRPF3O43395 683 aaKnown RBP35.46■■■■□ 3.27
CTCF-203ENST00000566078 USP48Q86UV5 1035 aa35.46■■■■□ 3.27
CTCF-203ENST00000566078 A0A1W2PRG0 241 aa35.45■■■■□ 3.27
CTCF-203ENST00000566078 GMCL1P1Q8NEA9 526 aa35.45■■■■□ 3.27
CTCF-203ENST00000566078 SYNPO2Q9UMS6 1093 aa35.45■■■■□ 3.27
CTCF-203ENST00000566078 F13A1P00488 732 aa35.44■■■■□ 3.26
CTCF-203ENST00000566078 ECE1P42892 770 aa35.44■■■■□ 3.26
CTCF-203ENST00000566078 CCDC96Q2M329 555 aa35.44■■■■□ 3.26
CTCF-203ENST00000566078 SLFN13Q68D06 897 aa35.44■■■■□ 3.26
CTCF-203ENST00000566078 ACER1Q8TDN7 264 aa35.44■■■■□ 3.26
CTCF-203ENST00000566078 GUCY1B3Q02153 619 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 ZNF543Q08ER8 600 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 CCDC84Q86UT8 332 aaPredicted RBP35.43■■■■□ 3.26
CTCF-203ENST00000566078 DCAF4Q8WV16 495 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 RRAGCQ9HB90 399 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 CLEC11AQ9Y240 323 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 V9GY48 417 aaPredicted RBP35.43■■■■□ 3.26
CTCF-203ENST00000566078 hCG_1642624A0A1W2PR95 340 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 PRKG1Q13976 671 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 CDCA5Q96FF9 252 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 GLIS2Q9BZE0 524 aaPredicted RBP35.43■■■■□ 3.26
CTCF-203ENST00000566078 TMX2Q9Y320 296 aa35.43■■■■□ 3.26
CTCF-203ENST00000566078 SCYL3Q8IZE3 742 aa35.42■■■■□ 3.26
CTCF-203ENST00000566078 KLRG1Q96E93 195 aa35.42■■■■□ 3.26
CTCF-203ENST00000566078 GPCPD1Q9NPB8 672 aa35.42■■■■□ 3.26
CTCF-203ENST00000566078 F5H6K3 240 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 VEGFAP15692 232 aaPredicted RBP35.41■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms