RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DDRGK1Q96HY6 314 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 NUP88Q99567 741 aaPredicted RBP10.96□□□□□ -0.65
VPS35-206ENST00000565228 MKNK2Q9HBH9 465 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 AS3MTQ9HBK9 375 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 SENP2Q9HC62 589 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 ZCCHC17Q9NP64 241 aaKnown RBP10.96□□□□□ -0.65
VPS35-206ENST00000565228 CABP5Q9NP86 173 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 MTMR4Q9NYA4 1195 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 C19orf81C9J6K1 198 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 ALDH1A1P00352 501 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 NOM1Q5C9Z4 860 aaKnown RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 CATSPERGQ6ZRH7 1159 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 FASTKD5Q7L8L6 764 aaKnown RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 LRRC47Q8N1G4 583 aaKnown RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 MKL1Q969V6 931 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 ZKSCAN3Q9BRR0 538 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 BEGAINQ9BUH8 593 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 TBC1D2Q9BYX2 928 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 RPAP3Q9H6T3 665 aaPredicted RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 VCPKMTQ9H867 229 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 KANSL2Q9H9L4 492 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 FBXO28Q9NVF7 368 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 RBPJLQ9UBG7 517 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 CLIP2Q9UDT6 1046 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 TAOK2Q9UL54 1235 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 SLC45A1Q9Y2W3 748 aa10.95□□□□□ -0.66
VPS35-206ENST00000565228 RBM8AQ9Y5S9 174 aaKnown RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 MKI67P46013 3256 aaKnown RBP10.95□□□□□ -0.66
VPS35-206ENST00000565228 SPDYE16A6NNV3 312 aaPredicted RBP10.94□□□□□ -0.66
VPS35-206ENST00000565228 B4E1Z4 1266 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 FKTNO75072 461 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 NDUFB10O96000 172 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 ANTXR2P58335 489 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 ATP2B2Q01814 1243 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 NECTIN1Q15223 517 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 RRP12Q5JTH9 1297 aaKnown RBP10.94□□□□□ -0.66
VPS35-206ENST00000565228 AMOTL1Q8IY63 956 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 RASEFQ8IZ41 740 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 ZNF444Q8N0Y2 327 aaPredicted RBP10.94□□□□□ -0.66
VPS35-206ENST00000565228 ANKRD13CQ8N6S4 541 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 ZFYVE28Q9HCC9 887 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 GPHNQ9NQX3 736 aaPredicted RBP10.94□□□□□ -0.66
VPS35-206ENST00000565228 BTBD7Q9P203 1132 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 NYAP2Q9P242 653 aa10.94□□□□□ -0.66
VPS35-206ENST00000565228 ZNF213O14771 459 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 RANBP6O60518 1105 aaKnown RBP10.93□□□□□ -0.66
VPS35-206ENST00000565228 CDC45O75419 566 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 HERVK_113P62684 666 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 SP3Q02447 781 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 PDE4BQ07343 736 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 OTOP1Q7RTM1 612 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 TRIM47Q96LD4 638 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 FEZ1Q99689 392 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 ZSWIM5Q9P217 1185 aa10.93□□□□□ -0.66
VPS35-206ENST00000565228 E7EWF7 191 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 F5H6K3 240 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 SLC27A2O14975 620 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 KDM4AO75164 1064 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TSPY3P0CV98 308 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TSPY8P0CW00 308 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TAL1P17542 331 aaPredicted RBP10.92□□□□□ -0.66
VPS35-206ENST00000565228 LACTBP83111 547 aaPredicted RBP10.92□□□□□ -0.66
VPS35-206ENST00000565228 KLRC3Q07444 240 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 SEC23AQ15436 765 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 ADCK5Q3MIX3 580 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 FAM83BQ5T0W9 1011 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 OTUD7BQ6GQQ9 843 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 MFSD6Q6ZSS7 791 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 CHST3Q7LGC8 479 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 REPS2Q8NFH8 660 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 PARK7Q99497 189 aaKnown RBP10.92□□□□□ -0.66
VPS35-206ENST00000565228 TMEM47Q9BQJ4 181 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 MCOLN1Q9GZU1 580 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 PORCNQ9H237 461 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TCP11L1Q9NUJ3 509 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TMOD4Q9NZQ9 345 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 GABRQQ9UN88 632 aa10.92□□□□□ -0.66
VPS35-206ENST00000565228 TSPY2A6NKD2 308 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L15C9J2P7 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L13C9JLJ4 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L11C9JVI0 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L18D6R9N7 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L22D6RA61 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L17D6RBQ6 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L19D6RCP7 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L20D6RJB6 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 SEC24BO95487 1268 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 TTLL1O95922 423 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 MFAP1P55081 439 aaKnown RBP10.91□□□□□ -0.66
VPS35-206ENST00000565228 USP17L24Q0WX57 530 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 SLC35G1Q2M3R5 365 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 CREB3L3Q68CJ9 461 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 TTBK2Q6IQ55 1244 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 MB21D2Q8IYB1 491 aaPredicted RBP10.91□□□□□ -0.66
VPS35-206ENST00000565228 RUFY2Q8WXA3 655 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 ATG4CQ96DT6 458 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 ARHGEF10LQ9HCE6 1279 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 MORF4L1Q9UBU8 362 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 ADAMTS5Q9UNA0 930 aa10.91□□□□□ -0.66
VPS35-206ENST00000565228 ZNFX1Q9P2E3 1918 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms