RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KRT26Q7Z3Y9 468 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 TMTC1Q8IUR5 882 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 FMN2Q9NZ56 1722 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 EBAG9O00559 213 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 ACTN4O43707 911 aaKnown RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 MAGEA9P43362 315 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 CASP7P55210 303 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 MDM2Q00987 491 aaPredicted RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 KIF6Q6ZMV9 814 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 PROSER2Q86WR7 435 aaPredicted RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 NOC3LQ8WTT2 800 aaKnown RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 PPM1EQ8WY54 764 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 NWD1Q149M9 1564 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 TTC26A0AVF1 554 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 PATL2C9JE40 543 aaKnown RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 CCDC70Q6NSX1 233 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 KANK3Q6NY19 840 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 DCAF5Q96JK2 942 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 CTAGE1Q96RT6 745 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 KAT14Q9H8E8 782 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 ZNHIT6Q9NWK9 470 aaKnown RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 PIK3C2AO00443 1686 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 ERLIN2O94905 339 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 NDUFA10O95299 355 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 PLEKHA8P1O95397 391 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 PAK1Q13153 545 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 TCIRG1Q13488 830 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 TTF1Q15361 905 aaPredicted RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 NTRK3Q16288 839 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 ZNF654Q8IZM8 581 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 SH2D3CQ8N5H7 860 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 RRP36Q96EU6 259 aaKnown RBP12.75□□□□□ -0.37
LDLR-208ENST00000558518 TMEM87BQ96K49 555 aa12.75□□□□□ -0.37
LDLR-208ENST00000558518 PP2D1A8MPX8 630 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 B4DLN1 442 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 ARID5AQ03989 594 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 FANCBQ8NB91 859 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 NACAP1Q9BZK3 213 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 UBXN6Q9BZV1 441 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 DIP2AQ14689 1571 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 SHTN1A0MZ66 631 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 ANKRD18BA2A2Z9 1011 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 FMNL1O95466 1100 aaPredicted RBP12.74□□□□□ -0.37
LDLR-208ENST00000558518 NOP2P46087 812 aaKnown RBP12.74□□□□□ -0.37
LDLR-208ENST00000558518 MTIF2P46199 727 aaKnown RBP12.74□□□□□ -0.37
LDLR-208ENST00000558518 MAP3K12Q12852 859 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 PDCLQ13371 301 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 WHAMMP3Q1A5X7 153 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 CCDC178Q5BJE1 867 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 AKNAD1Q5T1N1 836 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 LCORLQ8N3X6 602 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 BCCIPQ9P287 314 aaKnown RBP eCLIP12.74□□□□□ -0.37
LDLR-208ENST00000558518 ESYT3A0FGR9 886 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 DEXIO95424 95 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 GUCY2FP51841 1108 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 RASGRP2Q7LDG7 609 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 HDAC7Q8WUI4 952 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 SELENOOQ9BVL4 669 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 BRMS1Q9HCU9 246 aa12.74□□□□□ -0.37
LDLR-208ENST00000558518 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.74□□□□□ -0.37
LDLR-208ENST00000558518 SRPRBQ9Y5M8 271 aaKnown RBP12.74□□□□□ -0.37
LDLR-208ENST00000558518 HPDP32754 393 aaPredicted RBP12.73□□□□□ -0.37
LDLR-208ENST00000558518 STAT6P42226 847 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 PROCA1Q8NCQ7 364 aaPredicted RBP12.73□□□□□ -0.37
LDLR-208ENST00000558518 TANGO6Q9C0B7 1094 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 EPB41L4AQ9HCS5 686 aaPredicted RBP12.73□□□□□ -0.37
LDLR-208ENST00000558518 NDUFAB1O14561 156 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 MYO1BO43795 1136 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 KRT2P35908 639 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 ANKRD18AQ8IVF6 992 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 EFCC1Q9HA90 598 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 FAM207AQ9NSI2 230 aaPredicted RBP12.73□□□□□ -0.37
LDLR-208ENST00000558518 AGPAT5Q9NUQ2 364 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 CAPN7Q9Y6W3 813 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 KIAA0754O94854 1291 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 BCAMP50895 628 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 FAM47AQ5JRC9 791 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 TTC38Q5R3I4 469 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 DNAJC10Q8IXB1 793 aa12.73□□□□□ -0.37
LDLR-208ENST00000558518 CRACR2BQ8N4Y2 399 aaPredicted RBP12.73□□□□□ -0.37
LDLR-208ENST00000558518 BACH1O14867 736 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 NCK2O43639 380 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 BUB1O43683 1085 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 NMT2O60551 498 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 PPFIA4O75335 1185 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 CYP7A1P22680 504 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 ERCC5P28715 1186 aaPredicted RBP12.72□□□□□ -0.37
LDLR-208ENST00000558518 ANKLE2Q86XL3 938 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 STRBPQ96SI9 672 aaKnown RBP12.72□□□□□ -0.37
LDLR-208ENST00000558518 LACRTQ9GZZ8 138 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 SRCAPQ6ZRS2 3230 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 TNKSO95271 1327 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 IFNAR1P17181 557 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 IFIT1BQ5T764 474 aaKnown RBP12.72□□□□□ -0.37
LDLR-208ENST00000558518 OR8K1Q8NGG5 319 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 HPS3Q969F9 1004 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 NAA15Q9BXJ9 866 aaKnown RBP12.72□□□□□ -0.37
LDLR-208ENST00000558518 MMRN2Q9H8L6 949 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 MKRN1Q9UHC7 482 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms