RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 STX8Q9UNK0 236 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 SNX14Q9Y5W7 946 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 GREB1LQ9C091 1923 aaPredicted RBP25.24■■□□□ 1.63
NEK3-202ENST00000550841 A0A1W2PRG0 241 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 ERICH2A1L162 156 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 ALDH1A1P00352 501 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 NOVP48745 357 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 BRI3BPQ8WY22 251 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 LPAR1Q92633 364 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 C12orf42Q96LP6 360 aa25.23■■□□□ 1.63
NEK3-202ENST00000550841 ZCCHC17Q9NP64 241 aaKnown RBP25.23■■□□□ 1.63
NEK3-202ENST00000550841 NMT2O60551 498 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 TOP1P11387 765 aaKnown RBP25.22■■□□□ 1.63
NEK3-202ENST00000550841 PABPC4Q13310 644 aaKnown RBP eCLIP25.22■■□□□ 1.63
NEK3-202ENST00000550841 ANKRD23Q86SG2 305 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 IFNL1Q8IU54 200 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 CLEC10AQ8IUN9 316 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 MB21D2Q8IYB1 491 aaPredicted RBP25.22■■□□□ 1.63
NEK3-202ENST00000550841 ANKS1AQ92625 1134 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 VCPKMTQ9H867 229 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 EMILIN3Q9NT22 766 aa25.22■■□□□ 1.63
NEK3-202ENST00000550841 ANAPC15P60006 121 aa25.21■■□□□ 1.63
NEK3-202ENST00000550841 ZYXQ15942 572 aaKnown RBP25.21■■□□□ 1.63
NEK3-202ENST00000550841 CYB5R4Q7L1T6 521 aa25.21■■□□□ 1.63
NEK3-202ENST00000550841 ZKSCAN3Q9BRR0 538 aa25.21■■□□□ 1.63
NEK3-202ENST00000550841 AGTPBP1Q9UPW5 1226 aa25.21■■□□□ 1.63
NEK3-202ENST00000550841 SLC45A1Q9Y2W3 748 aa25.21■■□□□ 1.63
NEK3-202ENST00000550841 IFIT3O14879 490 aaKnown RBP25.2■■□□□ 1.62
NEK3-202ENST00000550841 MOGSQ13724 837 aa25.2■■□□□ 1.62
NEK3-202ENST00000550841 DHX32Q7L7V1 743 aaKnown RBP25.2■■□□□ 1.62
NEK3-202ENST00000550841 TNKSO95271 1327 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 WDR19Q8NEZ3 1342 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 BTBD19C9JJ37 291 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 TMTC2Q8N394 836 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 GMCL1P1Q8NEA9 526 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 NKX2-3Q8TAU0 364 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 TMEM87BQ96K49 555 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 JAKMIP1Q96N16 626 aaKnown RBP25.19■■□□□ 1.62
NEK3-202ENST00000550841 PTPN18Q99952 460 aa25.19■■□□□ 1.62
NEK3-202ENST00000550841 F5H6K3 240 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 PRC1O43663 620 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 KLRC3Q07444 240 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 ADCK5Q3MIX3 580 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 IFIT1BQ5T764 474 aaKnown RBP25.18■■□□□ 1.62
NEK3-202ENST00000550841 GPAT2Q6NUI2 795 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 BLOC1S2Q6QNY1 142 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 TMEM47Q9BQJ4 181 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 TM6SF1Q9BZW5 370 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 MCOLN1Q9GZU1 580 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 KAT14Q9H8E8 782 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 PNMA3Q9UL41 463 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 PTPRFP10586 1907 aa25.18■■□□□ 1.62
NEK3-202ENST00000550841 PDHXO00330 501 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 RAD21O60216 631 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 OSBPP22059 807 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 HOXA7P31268 230 aaPredicted RBP25.17■■□□□ 1.62
NEK3-202ENST00000550841 DGKZQ13574 1117 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 WTAPQ15007 396 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 TMEM67Q5HYA8 995 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 RCSD1Q6JBY9 416 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 ENAHQ8N8S7 591 aaPredicted RBP25.17■■□□□ 1.62
NEK3-202ENST00000550841 BACH2Q9BYV9 841 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 MYH4Q9Y623 1939 aa25.17■■□□□ 1.62
NEK3-202ENST00000550841 USP17L15C9J2P7 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L13C9JLJ4 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L11C9JVI0 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L18D6R9N7 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L22D6RA61 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L17D6RBQ6 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L19D6RCP7 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L20D6RJB6 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 IGF2BP3O00425 579 aaKnown RBP eCLIP25.16■■□□□ 1.62
NEK3-202ENST00000550841 WDR46O15213 610 aaKnown RBP25.16■■□□□ 1.62
NEK3-202ENST00000550841 USP17L24Q0WX57 530 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 SEC23AQ15436 765 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 SLFN13Q68D06 897 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 CHST3Q7LGC8 479 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 LRRC47Q8N1G4 583 aaKnown RBP25.16■■□□□ 1.62
NEK3-202ENST00000550841 FAM43AQ8N2R8 423 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 IGDCC4Q8TDY8 1250 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 SAGE1Q9NXZ1 904 aa25.16■■□□□ 1.62
NEK3-202ENST00000550841 VCAM1P19320 739 aa25.15■■□□□ 1.62
NEK3-202ENST00000550841 ANTXR2P58335 489 aa25.15■■□□□ 1.62
NEK3-202ENST00000550841 EXOSC10Q01780 885 aaKnown RBP25.15■■□□□ 1.62
NEK3-202ENST00000550841 TREML2Q5T2D2 321 aa25.15■■□□□ 1.62
NEK3-202ENST00000550841 NDUFB10O96000 172 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 CASTP20810 708 aaKnown RBP25.14■■□□□ 1.62
NEK3-202ENST00000550841 SPICE1Q8N0Z3 855 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 C22orf23Q9BZE7 217 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 RPAP3Q9H6T3 665 aaPredicted RBP25.14■■□□□ 1.62
NEK3-202ENST00000550841 ZFYVE28Q9HCC9 887 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 ZSWIM6Q9HCJ5 1215 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 RNF186Q9NXI6 227 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 CYP46A1Q9Y6A2 500 aa25.14■■□□□ 1.62
NEK3-202ENST00000550841 TRPA1O75762 1119 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 LIFRP42702 1097 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 IRX3P78415 501 aaPredicted RBP25.13■■□□□ 1.61
NEK3-202ENST00000550841 FGD1P98174 961 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 TAF1CQ15572 869 aaPredicted RBP25.13■■□□□ 1.61
NEK3-202ENST00000550841 CATSPERGQ6ZRH7 1159 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms