RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 CCZ1BP86790 482 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 CCZ1P86791 482 aaPredicted RBP17.14■□□□□ 0.33
CHFR-223ENST00000544268 NCAPHQ15003 741 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 MFSD6Q6ZSS7 791 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 NUP133Q8WUM0 1156 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 SHISA4Q96DD7 197 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.14■□□□□ 0.33
CHFR-223ENST00000544268 DBNDD1Q9H9R9 158 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 ZNF446Q9NWS9 450 aa17.14■□□□□ 0.33
CHFR-223ENST00000544268 PRDM1O75626 825 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 SMC2O95347 1197 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 DPEP1P16444 411 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 CMA1P23946 247 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 CDC25BP30305 580 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 RAD51AP2Q09MP3 1159 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 ELF2Q15723 593 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 FOXP4Q8IVH2 680 aaPredicted RBP17.13■□□□□ 0.33
CHFR-223ENST00000544268 OXER1Q8TDS5 423 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 HSD3B7Q9H2F3 369 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 SNED1Q8TER0 1413 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 DLEC1Q9Y238 1755 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 G3V3G9 751 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 CAVIN2O95810 425 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 KCNA3P22001 575 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 SYKP43405 635 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 TOB1P50616 345 aaPredicted RBP17.13■□□□□ 0.33
CHFR-223ENST00000544268 R3HDM1Q15032 1099 aaKnown RBP17.13■□□□□ 0.33
CHFR-223ENST00000544268 PTPN14Q15678 1187 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 LONRF3Q496Y0 759 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 DCAF8Q5TAQ9 597 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 NYAP1Q6ZVC0 841 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 SGMS1Q86VZ5 419 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 STAG1Q8WVM7 1258 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 TMEM87BQ96K49 555 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 TRERF1Q96PN7 1200 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 MXD3Q9BW11 206 aa17.13■□□□□ 0.33
CHFR-223ENST00000544268 RTFDC1Q9BY42 306 aaPredicted RBP17.13■□□□□ 0.33
CHFR-223ENST00000544268 DCP1AQ9NPI6 582 aaPredicted RBP17.13■□□□□ 0.33
CHFR-223ENST00000544268 FAM205CA6NFA0 338 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 GOLGA8FQ08AF8 430 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 GOLGA8DPQ0D2H9 430 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 CTR9Q6PD62 1173 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 CERS5Q8N5B7 392 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 TTLL6Q8N841 843 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 SH3RF3Q8TEJ3 882 aaPredicted RBP17.12■□□□□ 0.33
CHFR-223ENST00000544268 KCNQ5Q9NR82 932 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 USP17L12C9JPN9 530 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 USP17L21D6R901 530 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 NEMFO60524 1076 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 SLU7O95391 586 aaKnown RBP17.12■□□□□ 0.33
CHFR-223ENST00000544268 SLC4A8Q2Y0W8 1093 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 DPF2Q92785 391 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 ATP8A2Q9NTI2 1148 aa17.12■□□□□ 0.33
CHFR-223ENST00000544268 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.12■□□□□ 0.33
CHFR-223ENST00000544268 V9GYY5 206 aaPredicted RBP17.12■□□□□ 0.33
CHFR-223ENST00000544268 LDHCP07864 332 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 METTL16Q86W50 562 aaKnown RBP17.11■□□□□ 0.33
CHFR-223ENST00000544268 GRAMD1CQ8IYS0 662 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 CHMP4CQ96CF2 233 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 YY1AP1Q9H869 796 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 ANAPC4Q9UJX5 808 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 BAG3O95817 575 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 H2AFXP16104 143 aaPredicted RBP17.11■□□□□ 0.33
CHFR-223ENST00000544268 PPP4CP60510 307 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 SSRP1Q08945 709 aaKnown RBP17.11■□□□□ 0.33
CHFR-223ENST00000544268 MTFR1LQ9H019 292 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 CNNM2Q9H8M5 875 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 HPSEQ9Y251 543 aa17.11■□□□□ 0.33
CHFR-223ENST00000544268 F8W031 263 aaPredicted RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 CDKL5O76039 1030 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 BMP6P22004 513 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 BTDP43251 543 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 NLRP12P59046 1061 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 ZRSR1Q15695 479 aaKnown RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 AOC3Q16853 763 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 ARMCX5Q6P1M9 558 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 USP49Q70CQ1 688 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 TMC6Q7Z403 805 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 DIS3L2Q8IYB7 885 aaKnown RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 KRT23Q9C075 422 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 GEMIN8Q9NWZ8 242 aaKnown RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 KIF13BQ9NQT8 1826 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 FMNL1O95466 1100 aaPredicted RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 LIFRP42702 1097 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 WTAPQ15007 396 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 GRIPAP1Q4V328 841 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 MUM1L1Q5H9M0 696 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 CC2D2BQ6DHV5 1058 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 PODNQ7Z5L7 613 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 NAT10Q9H0A0 1025 aaKnown RBP17.1■□□□□ 0.33
CHFR-223ENST00000544268 PCDHB6Q9Y5E3 794 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 FHOD1Q9Y613 1164 aa17.1■□□□□ 0.33
CHFR-223ENST00000544268 GPR75-ASB3A0A0A6YYF3 556 aa17.09■□□□□ 0.33
CHFR-223ENST00000544268 CYP2D6P10635 497 aa17.09■□□□□ 0.33
CHFR-223ENST00000544268 TNNT3P45378 269 aaPredicted RBP17.09■□□□□ 0.33
CHFR-223ENST00000544268 PDE4BQ07343 736 aa17.09■□□□□ 0.33
CHFR-223ENST00000544268 TRIM29Q14134 588 aa17.09■□□□□ 0.33
CHFR-223ENST00000544268 RTN1Q16799 776 aa17.09■□□□□ 0.33
CHFR-223ENST00000544268 NOM1Q5C9Z4 860 aaKnown RBP17.09■□□□□ 0.33
CHFR-223ENST00000544268 EARS2Q5JPH6 523 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms