RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 NUP88Q99567 741 aaPredicted RBP12.74□□□□□ -0.37
HMGA2-209ENST00000539662 VCPKMTQ9H867 229 aa12.74□□□□□ -0.37
HMGA2-209ENST00000539662 KANSL2Q9H9L4 492 aa12.74□□□□□ -0.37
HMGA2-209ENST00000539662 CLIP2Q9UDT6 1046 aa12.74□□□□□ -0.37
HMGA2-209ENST00000539662 PNMA3Q9UL41 463 aa12.74□□□□□ -0.37
HMGA2-209ENST00000539662 TAOK2Q9UL54 1235 aa12.74□□□□□ -0.37
HMGA2-209ENST00000539662 SPDYE16A6NNV3 312 aaPredicted RBP12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L15C9J2P7 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L13C9JLJ4 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L11C9JVI0 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L18D6R9N7 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L22D6RA61 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L17D6RBQ6 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L19D6RCP7 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L20D6RJB6 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 FMNL1O95466 1100 aaPredicted RBP12.73□□□□□ -0.37
HMGA2-209ENST00000539662 FGRP09769 529 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 PRKCZQ05513 592 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 PDE4BQ07343 736 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 USP17L24Q0WX57 530 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 PABPC4Q13310 644 aaKnown RBP eCLIP12.73□□□□□ -0.37
HMGA2-209ENST00000539662 LRRC47Q8N1G4 583 aaKnown RBP12.73□□□□□ -0.37
HMGA2-209ENST00000539662 NEDD1Q8NHV4 660 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 PAGR1Q9BTK6 254 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 ARHGEF10LQ9HCE6 1279 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 FBXO28Q9NVF7 368 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 MTMR4Q9NYA4 1195 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 BTBD7Q9P203 1132 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 TAF6LQ9Y6J9 622 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 COL11A1P12107 1806 aaPredicted RBP12.73□□□□□ -0.37
HMGA2-209ENST00000539662 A0A0G2JMZ2 1700 aa12.73□□□□□ -0.37
HMGA2-209ENST00000539662 PLIN4Q96Q06 1357 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 ZMYM6O95789 1325 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 NEDD4P46934 1319 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 HIP1O00291 1037 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 RAD21O60216 631 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 RANBP6O60518 1105 aaKnown RBP12.72□□□□□ -0.37
HMGA2-209ENST00000539662 TSPY3P0CV98 308 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 TSPY8P0CW00 308 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 KIF22Q14807 665 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 PKN2Q16513 984 aaKnown RBP12.72□□□□□ -0.37
HMGA2-209ENST00000539662 FAM110CQ1W6H9 321 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 RRP12Q5JTH9 1297 aaKnown RBP12.72□□□□□ -0.37
HMGA2-209ENST00000539662 SH3TC2Q8TF17 1288 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 PORCNQ9H237 461 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 NYAP2Q9P242 653 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 MORF4L1Q9UBU8 362 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 SRRDQ9UH36 339 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 BRCA2P51587 3418 aa12.72□□□□□ -0.37
HMGA2-209ENST00000539662 F5H6K3 240 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 SGSM2O43147 1006 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 ORC4O43929 436 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 NDUFB10O96000 172 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 MYCP01106 439 aaPredicted RBP12.71□□□□□ -0.37
HMGA2-209ENST00000539662 NEFLP07196 543 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 SLC3A2P08195 630 aaKnown RBP12.71□□□□□ -0.37
HMGA2-209ENST00000539662 GCLCP48506 637 aaPredicted RBP12.71□□□□□ -0.37
HMGA2-209ENST00000539662 FCGRTP55899 365 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 SOX10P56693 466 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 KLRC3Q07444 240 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 FAM83BQ5T0W9 1011 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.37
HMGA2-209ENST00000539662 DSCC1Q9BVC3 393 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 TANGO6Q9C0B7 1094 aa12.71□□□□□ -0.37
HMGA2-209ENST00000539662 MYPNQ86TC9 1320 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 TSPY2A6NKD2 308 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 TNPO2O14787 897 aaKnown RBP12.7□□□□□ -0.38
HMGA2-209ENST00000539662 CENPBP07199 599 aaPredicted RBP12.7□□□□□ -0.38
HMGA2-209ENST00000539662 ERVK-9P63128 1117 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 ERVK-24P63145 666 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 AKNAD1Q5T1N1 836 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 GPRC5AQ8NFJ5 357 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 MKL1Q969V6 931 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 ATG4CQ96DT6 458 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 ZKSCAN3Q9BRR0 538 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 TOMM22Q9NS69 142 aa12.7□□□□□ -0.38
HMGA2-209ENST00000539662 ZNF213O14771 459 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 WDR46O15213 610 aaKnown RBP12.69□□□□□ -0.38
HMGA2-209ENST00000539662 FLOT1O75955 427 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 TTLL1O95922 423 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 DSG3P32926 999 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 FLT3LGP49771 235 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 MFAP1P55081 439 aaKnown RBP12.69□□□□□ -0.38
HMGA2-209ENST00000539662 COL9A3Q14050 684 aaPredicted RBP12.69□□□□□ -0.38
HMGA2-209ENST00000539662 COG2Q14746 738 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 RCSD1Q6JBY9 416 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 LBX2Q6XYB7 198 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 STAG1Q8WVM7 1258 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 LPAR1Q92633 364 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 ZNF287Q9HBT7 754 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 GJD2Q9UKL4 321 aa12.69□□□□□ -0.38
HMGA2-209ENST00000539662 RAD50Q92878 1312 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 ELNP15502 786 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 NOVP48745 357 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 BMP2KLQ5H9B9 411 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 MFSD6Q6ZSS7 791 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 SH2D4AQ9H788 454 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 GOPCQ9HD26 462 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 STX8Q9UNK0 236 aa12.68□□□□□ -0.38
HMGA2-209ENST00000539662 MTMR7Q9Y216 660 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms