RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 ACSS3Q9H6R3 686 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 LRRC4CQ9HCJ2 640 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 CACNA2D2Q9NY47 1150 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 ZNRF3Q9ULT6 936 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 PCDHGC5Q9Y5F6 944 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 KTN1Q86UP2 1357 aaKnown RBP3.98□□□□□ -1.77
CSDE1-216ENST00000534389 ABCA5Q8WWZ7 1642 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 PRXQ9BXM0 1461 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 ARHGAP35Q9NRY4 1499 aa3.98□□□□□ -1.77
CSDE1-216ENST00000534389 HMX2A2RU54 273 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 CCDC85CA6NKD9 419 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 GNAT3A8MTJ3 354 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 UPK3BL1B0FP48 263 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 UPK3BL2E5RIL1 263 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 GSC2O15499 205 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 FAM87AP0C7U9 286 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 ETV3P41162 512 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 SOX9P48436 509 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 CYP27A1Q02318 531 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 FAM50AQ14320 339 aaKnown RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 SOGA3Q5TF21 947 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 OVOS1Q6IE37 1185 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 KRTAP5-3Q6L8H2 238 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 PRR23CQ6ZRP0 262 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 Q6ZS46 218 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 MCF2L2Q86YR7 1114 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 MCATQ8IVS2 390 aaKnown RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 FTSJ3Q8IY81 847 aaKnown RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 ARMC10Q8N2F6 343 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 UBXN4Q92575 508 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 DHX38Q92620 1227 aaKnown RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 ACSF2Q96CM8 615 aaPredicted RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 DHRS1Q96LJ7 313 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 KIF2CQ99661 725 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 FAM83CQ9BQN1 747 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 ASCC2Q9H1I8 757 aaPredicted RBP3.97□□□□□ -1.77
CSDE1-216ENST00000534389 C7orf69Q9H7B7 122 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 EHMT1Q9H9B1 1298 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 FBRSQ9HAH7 460 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 TPSG1Q9NRR2 321 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 ACTR10Q9NZ32 417 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 TJP2Q9UDY2 1190 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 SLC12A7Q9Y666 1083 aa3.97□□□□□ -1.77
CSDE1-216ENST00000534389 UQCRHLA0A096LP55 91 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 SLC22A31A6NKX4 558 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 FAM155AB1AL88 458 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CHURC1-FNTBB4DL54 471 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CLEC3AO75596 197 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 DDAH1O94760 285 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 ATE1O95260 518 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CBX7O95931 251 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CST3P01034 146 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 UQCRHP07919 91 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 ATP2B3Q16720 1220 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 TMEM201Q5SNT2 666 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 LETMD1Q6P1Q0 360 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 ANKS3Q6ZW76 656 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CENPQQ7L2Z9 268 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CDH24Q86UP0 819 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 ZSCAN30Q86W11 494 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 LSRQ86X29 649 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 TEX2Q8IWB9 1127 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 MRPL41Q8IXM3 137 aaKnown RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 DHX37Q8IY37 1157 aaKnown RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 PPP1R14AQ96A00 147 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 DNAJC2Q99543 621 aaKnown RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 TM9SF2Q99805 663 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 METTL22Q9BUU2 404 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CCDC94Q9BW85 323 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 SSBP4Q9BWG4 385 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 MKRN2Q9H000 416 aaKnown RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 MYH16Q9H6N6 1097 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 ZNF408Q9H9D4 720 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 CWC22Q9HCG8 908 aaKnown RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 PRDM5Q9NQX1 630 aaPredicted RBP3.96□□□□□ -1.78
CSDE1-216ENST00000534389 FAM86C1Q9NVL1 165 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 GTF2IRD1Q9UHL9 959 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 TIAM1Q13009 1591 aa3.96□□□□□ -1.78
CSDE1-216ENST00000534389 LRRC9Q6ZRR7 1453 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 WDR64B1ANS9 1081 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 DYNC1I1O14576 645 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 SMAD7O15105 426 aaKnown RBP3.95□□□□□ -1.78
CSDE1-216ENST00000534389 FGRP09769 529 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 FURINP09958 794 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 GUCY2CP25092 1073 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 NFIAQ12857 509 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 CNGB1Q14028 1251 aaPredicted RBP3.95□□□□□ -1.78
CSDE1-216ENST00000534389 NKG7Q16617 165 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 BBS9Q3SYG4 887 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 GNPTABQ3T906 1256 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 LCE3BQ5TA77 95 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 RUFY4Q6ZNE9 571 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 CYB5D2Q8WUJ1 264 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 EZH1Q92800 747 aaPredicted RBP3.95□□□□□ -1.78
CSDE1-216ENST00000534389 ATG4CQ96DT6 458 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 DBNDD2Q9BQY9 259 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 GTPBP4Q9BZE4 634 aaKnown RBP3.95□□□□□ -1.78
CSDE1-216ENST00000534389 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms