RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SRBD1Q8N5C6 995 aaKnown RBP24.39■■□□□ 1.5
VPS28-208ENST00000527797 FBXO18Q8NFZ0 1043 aa24.39■■□□□ 1.5
VPS28-208ENST00000527797 MAD2L2Q9UI95 211 aa24.39■■□□□ 1.5
VPS28-208ENST00000527797 GH2P01242 217 aa24.39■■□□□ 1.49
VPS28-208ENST00000527797 PARP1P09874 1014 aaKnown RBP24.39■■□□□ 1.49
VPS28-208ENST00000527797 GUCY1A2P33402 732 aa24.39■■□□□ 1.49
VPS28-208ENST00000527797 HIRAP54198 1017 aaPredicted RBP24.39■■□□□ 1.49
VPS28-208ENST00000527797 ATP2B2Q01814 1243 aa24.39■■□□□ 1.49
VPS28-208ENST00000527797 RRP1BQ14684 758 aaKnown RBP24.39■■□□□ 1.49
VPS28-208ENST00000527797 LRRC47Q8N1G4 583 aaKnown RBP24.39■■□□□ 1.49
VPS28-208ENST00000527797 LZTS2Q9BRK4 669 aa24.39■■□□□ 1.49
VPS28-208ENST00000527797 ZSCAN16Q9H4T2 348 aaPredicted RBP24.39■■□□□ 1.49
VPS28-208ENST00000527797 MYH8P13535 1937 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 PALM3A6NDB9 673 aaPredicted RBP24.38■■□□□ 1.49
VPS28-208ENST00000527797 EEF2P13639 858 aaKnown RBP24.38■■□□□ 1.49
VPS28-208ENST00000527797 GUCY1B3Q02153 619 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 ICA1Q05084 483 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 TRIM29Q14134 588 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 SHROOM1Q2M3G4 852 aaPredicted RBP24.38■■□□□ 1.49
VPS28-208ENST00000527797 MCTP1Q6DN14 999 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 MKL1Q969V6 931 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 AIFM3Q96NN9 605 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 GGA3Q9NZ52 723 aa24.38■■□□□ 1.49
VPS28-208ENST00000527797 V9GY48 417 aaPredicted RBP24.38■■□□□ 1.49
VPS28-208ENST00000527797 FOXD4L6Q3SYB3 417 aaPredicted RBP24.37■■□□□ 1.49
VPS28-208ENST00000527797 FOXD4L3Q6VB84 417 aaPredicted RBP24.37■■□□□ 1.49
VPS28-208ENST00000527797 STAG2Q8N3U4 1231 aa24.37■■□□□ 1.49
VPS28-208ENST00000527797 CNTNAP5Q8WYK1 1306 aa24.36■■□□□ 1.49
VPS28-208ENST00000527797 JAG1P78504 1218 aa24.36■■□□□ 1.49
VPS28-208ENST00000527797 OTUD7BQ6GQQ9 843 aa24.36■■□□□ 1.49
VPS28-208ENST00000527797 L3MBTL3Q96JM7 780 aaPredicted RBP24.36■■□□□ 1.49
VPS28-208ENST00000527797 RBM27Q9P2N5 1060 aaKnown RBP24.36■■□□□ 1.49
VPS28-208ENST00000527797 GREB1LQ9C091 1923 aaPredicted RBP24.36■■□□□ 1.49
VPS28-208ENST00000527797 USP17L5A8MUK1 530 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 UBE2Q2LH0YL09 131 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 PDHBP11177 359 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 PTMSP20962 102 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 RESTQ13127 1097 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 KRT40Q6A162 431 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 HOOK2Q96ED9 719 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 PPP2R3BQ9Y5P8 575 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 KLRF2D3W0D1 207 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 GOLGA8HP0CJ92 632 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 CAP2P40123 477 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 USP17L2Q6R6M4 530 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 CHAMP1Q96JM3 812 aa24.35■■□□□ 1.49
VPS28-208ENST00000527797 PITPNM2Q9BZ72 1349 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 SNHG28P0DPA3 235 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 PKN1Q16512 942 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 ASPRV1Q53RT3 343 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 SIAH1Q8IUQ4 282 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 GJB4Q9NTQ9 266 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 ZBTB21Q9ULJ3 1066 aa24.34■■□□□ 1.49
VPS28-208ENST00000527797 GLTPD2A6NH11 291 aa24.33■■□□□ 1.49
VPS28-208ENST00000527797 XBP1P17861 261 aa24.33■■□□□ 1.49
VPS28-208ENST00000527797 SMARCA1P28370 1054 aa24.33■■□□□ 1.49
VPS28-208ENST00000527797 NBPF12Q5TAG4 269 aaPredicted RBP24.33■■□□□ 1.49
VPS28-208ENST00000527797 DCAF15Q66K64 600 aa24.33■■□□□ 1.49
VPS28-208ENST00000527797 RASGRP2Q7LDG7 609 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 SYNPO2Q9UMS6 1093 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 hCG_1642624A0A1W2PR95 340 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 PHF20L1A8MW92 1017 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 DNM1Q05193 864 aaKnown RBP24.32■■□□□ 1.48
VPS28-208ENST00000527797 SPZ1Q9BXG8 430 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 ARHGEF10LQ9HCE6 1279 aa24.32■■□□□ 1.48
VPS28-208ENST00000527797 NCLP19338 710 aaKnown RBP24.31■■□□□ 1.48
VPS28-208ENST00000527797 ZNF543Q08ER8 600 aa24.31■■□□□ 1.48
VPS28-208ENST00000527797 DCPSQ96C86 337 aaKnown RBP24.31■■□□□ 1.48
VPS28-208ENST00000527797 FRMPD2Q68DX3 1309 aaPredicted RBP24.3■■□□□ 1.48
VPS28-208ENST00000527797 ASNSP08243 561 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 SCG2P13521 617 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 PFKFB3Q16875 520 aaPredicted RBP24.3■■□□□ 1.48
VPS28-208ENST00000527797 GPATCH4Q5T3I0 446 aaKnown RBP24.3■■□□□ 1.48
VPS28-208ENST00000527797 SLFN13Q68D06 897 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 USP50Q70EL3 339 aaPredicted RBP24.3■■□□□ 1.48
VPS28-208ENST00000527797 GMCL1P1Q8NEA9 526 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 DCAF4Q8WV16 495 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 ZNF341Q9BYN7 854 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 GINM1Q9NU53 330 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 CNPY2Q9Y2B0 182 aa24.3■■□□□ 1.48
VPS28-208ENST00000527797 RAD21O60216 631 aa24.29■■□□□ 1.48
VPS28-208ENST00000527797 KRT85P78386 507 aa24.29■■□□□ 1.48
VPS28-208ENST00000527797 KIF23Q02241 960 aaPredicted RBP24.29■■□□□ 1.48
VPS28-208ENST00000527797 SAFBQ15424 915 aaKnown RBP eCLIP24.29■■□□□ 1.48
VPS28-208ENST00000527797 CCDC96Q2M329 555 aa24.29■■□□□ 1.48
VPS28-208ENST00000527797 FAM173BQ6P4H8 233 aa24.29■■□□□ 1.48
VPS28-208ENST00000527797 PIBF1Q8WXW3 757 aa24.29■■□□□ 1.48
VPS28-208ENST00000527797 CYTH3O43739 400 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 CTNND1O60716 968 aaKnown RBP24.28■■□□□ 1.48
VPS28-208ENST00000527797 MMP1P03956 469 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 EPHX2P34913 555 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 GNL2Q13823 731 aaKnown RBP24.28■■□□□ 1.48
VPS28-208ENST00000527797 SLC35G1Q2M3R5 365 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 SUPT20HL1Q3ZLR7 823 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 PRAMEF18Q5VWM3 479 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 BRAPQ7Z569 592 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 GPCPD1Q9NPB8 672 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 F5H6K3 240 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 PRPF40AO75400 957 aaKnown RBP24.28■■□□□ 1.48
VPS28-208ENST00000527797 SLC1A4P43007 532 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms