RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 AKAP17AQ02040 695 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 SEPT2Q15019 361 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 ANKRD1Q15327 319 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 MB21D2Q8IYB1 491 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 GPC2Q8N158 579 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 NEK11Q8NG66 645 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 SECISBP2LQ93073 1101 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 SLC26A6Q9BXS9 759 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 ZNF287Q9HBT7 754 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 PI4KBQ9UBF8 816 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 ANKRD65E5RJM6 399 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 GJB2P29033 226 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 CEBPZQ03701 1054 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 MOB2Q70IA6 237 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 CATIPQ7Z7H3 387 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 USP48Q86UV5 1035 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 ZSCAN10Q96SZ4 725 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 GJB4Q9NTQ9 266 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 PCNTO95613 3336 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 STAG1Q8WVM7 1258 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 CEP95Q96GE4 821 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 GLIS2Q9BZE0 524 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 ADAMTSL1Q8N6G6 1762 aa9.99□□□□□ -0.81
LIMCH1-209ENST00000509277 UBE2Q2LH0YL09 131 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 EPHX2P34913 555 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 TERF1P54274 439 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ZNF445P59923 1031 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 SH3BP5LQ7L8J4 393 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ENAHQ8N8S7 591 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 GMLQ99445 158 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 UBA5Q9GZZ9 404 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 NMRK2Q9NPI5 230 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 RSPH14Q9UHP6 348 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 RASA1P20936 1047 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 HIRAP54198 1017 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ALX1Q15699 326 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 CCDC186Q7Z3E2 898 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ZKSCAN4Q969J2 545 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 FAM163AQ96GL9 167 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 SRRTQ9BXP5 876 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 A0A1B0GUL6 1792 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 QSER1Q2KHR3 1735 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 SNAP25P60880 206 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 SCRN1Q12765 414 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 TNFAIP1Q13829 316 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ABCB5Q2M3G0 1257 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 LARP1BQ659C4 914 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 CPLX2Q6PUV4 134 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 USP17L2Q6R6M4 530 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 ZNF654Q8IZM8 581 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 CTCFLQ8NI51 663 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 AIFM3Q96NN9 605 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 NUP88Q99567 741 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 TM6SF1Q9BZW5 370 aa9.98□□□□□ -0.81
LIMCH1-209ENST00000509277 GOLGA6L6A8MZA4 724 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 SLC16A2P36021 539 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 MCM2P49736 904 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 RTN1Q16799 776 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 SPDYE2Q495Y8 402 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 PNMA1Q8ND90 353 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 TTC14Q96N46 770 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 WRNIP1Q96S55 665 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 PDIA3P30101 505 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 INPP5BP32019 993 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 DGKZQ13574 1117 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 KCTD1Q719H9 257 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 ORC3Q9UBD5 711 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 TRIM75PA6NK02 468 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 TRAF5O00463 557 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 SH2B2O14492 632 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 MBD3O95983 291 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 RPS12P25398 132 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 ICA1Q05084 483 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 FAM173BQ6P4H8 233 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 APOA5Q6Q788 366 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 EP400NLQ6ZTU2 488 aa9.97□□□□□ -0.81
LIMCH1-209ENST00000509277 ARAP2Q8WZ64 1704 aa9.96□□□□□ -0.81
LIMCH1-209ENST00000509277 PTPDC1A2A3K4 754 aa9.96□□□□□ -0.81
LIMCH1-209ENST00000509277 LY9Q9HBG7 655 aa9.96□□□□□ -0.81
LIMCH1-209ENST00000509277 CNPY2Q9Y2B0 182 aa9.96□□□□□ -0.81
LIMCH1-209ENST00000509277 HDLBPQ00341 1268 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 HS1BP3Q53T59 392 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 TAF3Q5VWG9 929 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 FAM151AQ8WW52 585 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 DPF2Q92785 391 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 SNX21Q969T3 373 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 ZSCAN31Q96LW9 406 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 VPS33BQ9H267 617 aa9.96□□□□□ -0.82
LIMCH1-209ENST00000509277 RPAP1Q9BWH6 1393 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 PLEKHA8P1O95397 391 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 EXOSC10Q01780 885 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 ELF2Q15723 593 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 KRT222Q8N1A0 295 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 TMEM87BQ96K49 555 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 DHX36Q9H2U1 1008 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 ADARB2Q9NS39 739 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 LRRC37AA6NMS7 1700 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 GLTPD2A6NH11 291 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 CDC27P30260 824 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms