RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CDH23Q9H251 3354 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 MYCNP04198 464 aaPredicted RBP16.99■□□□□ 0.31
VARS-227ENST00000489979 POLR3DP05423 398 aaPredicted RBP16.99■□□□□ 0.31
VARS-227ENST00000489979 MAP3K12Q12852 859 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 COG2Q14746 738 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 TRIM60Q495X7 471 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 BADQ92934 168 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 SPATC1LQ9H0A9 340 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 SEMA6BQ9H3T3 888 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
VARS-227ENST00000489979 NAV1Q8NEY1 1877 aa16.99■□□□□ 0.31
VARS-227ENST00000489979 A0A1W2PRG0 241 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 SEPT4O43236 478 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 STRNO43815 780 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 COBLO75128 1261 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 ERCC3P19447 782 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 TANGO6Q9C0B7 1094 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 HOXC10Q9NYD6 342 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 SPTBN5Q9NRC6 3674 aaKnown RBP16.98■□□□□ 0.31
VARS-227ENST00000489979 PRUNE2Q8WUY3 3088 aa16.98■□□□□ 0.31
VARS-227ENST00000489979 MPHOSPH10O00566 681 aaKnown RBP16.97■□□□□ 0.31
VARS-227ENST00000489979 EVX2Q03828 476 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 GABPAQ06546 454 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 SNX17Q15036 470 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 PRAMEF19Q5SWL8 479 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 ZKSCAN2Q63HK3 967 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 SHCBP1Q8NEM2 672 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 MAFAQ8NHW3 353 aaPredicted RBP16.97■□□□□ 0.31
VARS-227ENST00000489979 RIOK1Q9BRS2 568 aaKnown RBP16.97■□□□□ 0.31
VARS-227ENST00000489979 PDLIM7Q9NR12 457 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 SMCHD1A6NHR9 2005 aa16.97■□□□□ 0.31
VARS-227ENST00000489979 A0A0G2JMZ2 1700 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 ZNFX1Q9P2E3 1918 aaKnown RBP16.96■□□□□ 0.31
VARS-227ENST00000489979 MAGEB6P1A0A0J9YX57 407 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 ADCYAP1R1P41586 468 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 TMED8Q6PL24 325 aaPredicted RBP16.96■□□□□ 0.31
VARS-227ENST00000489979 SH3RF1Q7Z6J0 888 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 FERMT2Q96AC1 680 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 SLC5A4Q9NY91 659 aa16.96■□□□□ 0.31
VARS-227ENST00000489979 TRIM43BA6NCK2 446 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 SMAD3P84022 425 aaKnown RBP16.95■□□□□ 0.3
VARS-227ENST00000489979 PLS1Q14651 629 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 LRRC41Q15345 812 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 KIAA1755Q5JYT7 1200 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 NCAPG2Q86XI2 1143 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 MYLIPQ8WY64 445 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 TRIM43Q96BQ3 446 aaPredicted RBP16.95■□□□□ 0.3
VARS-227ENST00000489979 TTYH1Q9H313 450 aaPredicted RBP16.95■□□□□ 0.3
VARS-227ENST00000489979 MCM9Q9NXL9 1143 aa16.95■□□□□ 0.3
VARS-227ENST00000489979 DSG3P32926 999 aa16.94■□□□□ 0.3
VARS-227ENST00000489979 FAM47AQ5JRC9 791 aa16.94■□□□□ 0.3
VARS-227ENST00000489979 MB21D1Q8N884 522 aa16.94■□□□□ 0.3
VARS-227ENST00000489979 MROH8Q9H579 483 aa16.94■□□□□ 0.3
VARS-227ENST00000489979 FLOT1O75955 427 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 TLE2Q04725 743 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 C1orf53Q5VUE5 145 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 SAMD1Q6SPF0 538 aaPredicted RBP16.93■□□□□ 0.3
VARS-227ENST00000489979 AACSQ86V21 672 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 ABRAQ8N0Z2 381 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 SLC44A5Q8NCS7 719 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 ATG4CQ96DT6 458 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 MAML3Q96JK9 1138 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 CRNKL1Q9BZJ0 848 aaKnown RBP16.93■□□□□ 0.3
VARS-227ENST00000489979 MYH8P13535 1937 aa16.93■□□□□ 0.3
VARS-227ENST00000489979 CYP2D6P10635 497 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 PDE6AP16499 860 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 ITGB8P26012 769 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 SLC9C2Q5TAH2 1124 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 TMEM179Q6ZVK1 233 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 ITPRIPQ8IWB1 547 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 SPICE1Q8N0Z3 855 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 SDR42E1Q8WUS8 393 aa16.92■□□□□ 0.3
VARS-227ENST00000489979 COL11A1P12107 1806 aaPredicted RBP16.91■□□□□ 0.3
VARS-227ENST00000489979 PARP14Q460N5 1801 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 FCER1AP12319 257 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 FOSL2P15408 326 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 CLEC10AQ8IUN9 316 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 SIAH1Q8IUQ4 282 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 FTSJ3Q8IY81 847 aaKnown RBP16.91■□□□□ 0.3
VARS-227ENST00000489979 DCP1AQ9NPI6 582 aaPredicted RBP16.91■□□□□ 0.3
VARS-227ENST00000489979 XPNPEP3Q9NQH7 507 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 PHF24Q9UPV7 400 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 EXOC6BQ9Y2D4 811 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 TACC3Q9Y6A5 838 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 ZNF532Q9HCE3 1301 aa16.91■□□□□ 0.3
VARS-227ENST00000489979 CLTBP09497 229 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 RARBP10826 455 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 AKR1B1P15121 316 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 EPHB4P54760 987 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 ICA1Q05084 483 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 TMEM132BQ14DG7 1078 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 TTF1Q15361 905 aaPredicted RBP16.9■□□□□ 0.3
VARS-227ENST00000489979 LCORLQ8N3X6 602 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 DYNLL2Q96FJ2 89 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 RNPC3Q96LT9 517 aaKnown RBP16.9■□□□□ 0.3
VARS-227ENST00000489979 VCPKMTQ9H867 229 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 ARHGEF10LQ9HCE6 1279 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 SWAP70Q9UH65 585 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 PLXNA1Q9UIW2 1896 aa16.9■□□□□ 0.3
VARS-227ENST00000489979 SLC25A27O95847 323 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms