RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 PORCNQ9H237 461 aa29.88■■■□□ 2.37
HMGN1-217ENST00000489072 RABGAP1Q9Y3P9 1069 aa29.88■■■□□ 2.37
HMGN1-217ENST00000489072 SPDYE16A6NNV3 312 aaPredicted RBP29.87■■■□□ 2.37
HMGN1-217ENST00000489072 CCL5P13501 91 aa29.87■■■□□ 2.37
HMGN1-217ENST00000489072 LBX2Q6XYB7 198 aa29.87■■■□□ 2.37
HMGN1-217ENST00000489072 FOXP2O15409 715 aa29.86■■■□□ 2.37
HMGN1-217ENST00000489072 EEF2P13639 858 aaKnown RBP29.86■■■□□ 2.37
HMGN1-217ENST00000489072 UBXN2AP68543 259 aa29.86■■■□□ 2.37
HMGN1-217ENST00000489072 VCPKMTQ9H867 229 aa29.86■■■□□ 2.37
HMGN1-217ENST00000489072 KANSL2Q9H9L4 492 aa29.86■■■□□ 2.37
HMGN1-217ENST00000489072 PARP14Q460N5 1801 aa29.86■■■□□ 2.37
HMGN1-217ENST00000489072 INHAP05111 366 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 IRX6P78412 446 aaPredicted RBP29.85■■■□□ 2.37
HMGN1-217ENST00000489072 PLEKHM2Q8IWE5 1019 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 SPICE1Q8N0Z3 855 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 NACAP1Q9BZK3 213 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 SH2D4AQ9H788 454 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 MKNK2Q9HBH9 465 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 BTBD7Q9P203 1132 aa29.85■■■□□ 2.37
HMGN1-217ENST00000489072 MAPK4P31152 587 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 ATP2B2Q01814 1243 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 LPAR1Q92633 364 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 SHISA4Q96DD7 197 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 TANGO6Q9C0B7 1094 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 UNC93B1Q9H1C4 597 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 A0A0G2JMZ2 1700 aa29.84■■■□□ 2.37
HMGN1-217ENST00000489072 RNF208Q9H0X6 261 aa29.83■■■□□ 2.37
HMGN1-217ENST00000489072 NAPBQ9H115 298 aa29.83■■■□□ 2.37
HMGN1-217ENST00000489072 PRDM1O75626 825 aa29.82■■■□□ 2.36
HMGN1-217ENST00000489072 COG2Q14746 738 aa29.82■■■□□ 2.36
HMGN1-217ENST00000489072 GPR142Q7Z601 462 aa29.82■■■□□ 2.36
HMGN1-217ENST00000489072 FAM227BQ96M60 508 aa29.82■■■□□ 2.36
HMGN1-217ENST00000489072 GJB1P08034 283 aa29.81■■■□□ 2.36
HMGN1-217ENST00000489072 VPS53Q5VIR6 699 aa29.81■■■□□ 2.36
HMGN1-217ENST00000489072 OSBPL3Q9H4L5 887 aa29.81■■■□□ 2.36
HMGN1-217ENST00000489072 HELLSQ9NRZ9 838 aa29.81■■■□□ 2.36
HMGN1-217ENST00000489072 MYH4Q9Y623 1939 aa29.81■■■□□ 2.36
HMGN1-217ENST00000489072 A0A0D9SFI3 127 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 TRIM6-TRIM34B2RNG4 842 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 PPARAQ07869 468 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 PLEKHH3Q7Z736 793 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 CCAR1Q8IX12 1150 aaKnown RBP29.8■■■□□ 2.36
HMGN1-217ENST00000489072 USP6NLQ92738 828 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 NUDT12Q9BQG2 462 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 HOXC10Q9NYD6 342 aa29.8■■■□□ 2.36
HMGN1-217ENST00000489072 IGKV6D-41A0A0C4DH26 115 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 WDR46O15213 610 aaKnown RBP29.79■■■□□ 2.36
HMGN1-217ENST00000489072 CYP2B6P20813 491 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 GJA8P48165 433 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 CCNA1P78396 465 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 MORN1Q5T089 497 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 SOCS4Q8WXH5 440 aa29.79■■■□□ 2.36
HMGN1-217ENST00000489072 HMGCRP04035 888 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 DSG3P32926 999 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 TRIM32Q13049 653 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 TICAM2Q86XR7 235 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 ZNF444Q8N0Y2 327 aaPredicted RBP29.78■■■□□ 2.36
HMGN1-217ENST00000489072 TRIB2Q92519 343 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 RILPL2Q969X0 211 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 ZNF287Q9HBT7 754 aa29.78■■■□□ 2.36
HMGN1-217ENST00000489072 FLOT1O75955 427 aa29.77■■■□□ 2.36
HMGN1-217ENST00000489072 NMIQ13287 307 aaPredicted RBP29.77■■■□□ 2.36
HMGN1-217ENST00000489072 ATG4CQ96DT6 458 aa29.77■■■□□ 2.36
HMGN1-217ENST00000489072 GOPCQ9HD26 462 aa29.77■■■□□ 2.36
HMGN1-217ENST00000489072 NYAP2Q9P242 653 aa29.77■■■□□ 2.36
HMGN1-217ENST00000489072 COL11A1P12107 1806 aaPredicted RBP29.77■■■□□ 2.36
HMGN1-217ENST00000489072 MCMDC2Q4G0Z9 681 aa29.76■■■□□ 2.35
HMGN1-217ENST00000489072 NKX2-3Q8TAU0 364 aa29.76■■■□□ 2.35
HMGN1-217ENST00000489072 U2AF1L4Q8WU68 220 aaKnown RBP29.76■■■□□ 2.35
HMGN1-217ENST00000489072 XRCC5P13010 732 aaKnown RBP29.75■■■□□ 2.35
HMGN1-217ENST00000489072 PDE4BQ07343 736 aa29.75■■■□□ 2.35
HMGN1-217ENST00000489072 WDR78Q5VTH9 848 aa29.75■■■□□ 2.35
HMGN1-217ENST00000489072 ZNF589Q86UQ0 364 aaPredicted RBP29.75■■■□□ 2.35
HMGN1-217ENST00000489072 MOV10L1Q9BXT6 1211 aaKnown RBP29.75■■■□□ 2.35
HMGN1-217ENST00000489072 CWC22Q9HCG8 908 aaKnown RBP29.75■■■□□ 2.35
HMGN1-217ENST00000489072 PAK6Q9NQU5 681 aaPredicted RBP29.75■■■□□ 2.35
HMGN1-217ENST00000489072 FBXO28Q9NVF7 368 aa29.75■■■□□ 2.35
HMGN1-217ENST00000489072 PLIN4Q96Q06 1357 aa29.75■■■□□ 2.35
HMGN1-217ENST00000489072 RAD21O60216 631 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 CTDSPL2Q05D32 466 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 FAM83BQ5T0W9 1011 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 CEP95Q96GE4 821 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 SPATC1LQ9H0A9 340 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.74■■■□□ 2.35
HMGN1-217ENST00000489072 TACC3Q9Y6A5 838 aa29.74■■■□□ 2.35
HMGN1-217ENST00000489072 SLC3A2P08195 630 aaKnown RBP29.73■■■□□ 2.35
HMGN1-217ENST00000489072 PTPREP23469 700 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 RGS2P41220 211 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 ALX1Q15699 326 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 FAM47AQ5JRC9 791 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 SAMD1Q6SPF0 538 aaPredicted RBP29.73■■■□□ 2.35
HMGN1-217ENST00000489072 MB21D1Q8N884 522 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 NEDD1Q8NHV4 660 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 INCENPQ9NQS7 918 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 MTMR4Q9NYA4 1195 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 CLIP2Q9UDT6 1046 aa29.73■■■□□ 2.35
HMGN1-217ENST00000489072 SGPL1O95470 568 aa29.72■■■□□ 2.35
HMGN1-217ENST00000489072 SDSP20132 328 aa29.72■■■□□ 2.35
HMGN1-217ENST00000489072 MAP2K5Q13163 448 aa29.72■■■□□ 2.35
HMGN1-217ENST00000489072 CCL14Q16627 93 aa29.72■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms