RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PDLIM7Q9NR12 457 aa20.94■□□□□ 0.94
VIM-204ENST00000478746 SLC5A4Q9NY91 659 aa20.94■□□□□ 0.94
VIM-204ENST00000478746 COBLO75128 1261 aa20.93■□□□□ 0.94
VIM-204ENST00000478746 LRRC41Q15345 812 aa20.93■□□□□ 0.94
VIM-204ENST00000478746 PRAMEF19Q5SWL8 479 aa20.93■□□□□ 0.94
VIM-204ENST00000478746 MAGEB6Q8N7X4 407 aa20.93■□□□□ 0.94
VIM-204ENST00000478746 SPATC1LQ9H0A9 340 aa20.93■□□□□ 0.94
VIM-204ENST00000478746 ERCC3P19447 782 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 GUCY1A2P33402 732 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 SHMT1P34896 483 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 PLCD1P51178 756 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 POLA2Q14181 598 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 SEPT2Q15019 361 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 C1orf53Q5VUE5 145 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 SHCBP1Q8NEM2 672 aa20.92■□□□□ 0.94
VIM-204ENST00000478746 SURF6O75683 361 aaKnown RBP20.91■□□□□ 0.94
VIM-204ENST00000478746 TRIM27P14373 513 aa20.91■□□□□ 0.94
VIM-204ENST00000478746 TLE2Q04725 743 aa20.91■□□□□ 0.94
VIM-204ENST00000478746 TANGO6Q9C0B7 1094 aa20.91■□□□□ 0.94
VIM-204ENST00000478746 TNNQ9UQP3 1299 aa20.91■□□□□ 0.94
VIM-204ENST00000478746 TACC3Q9Y6A5 838 aa20.91■□□□□ 0.94
VIM-204ENST00000478746 SPTBN5Q9NRC6 3674 aaKnown RBP20.9■□□□□ 0.94
VIM-204ENST00000478746 POLR3DP05423 398 aaPredicted RBP20.9■□□□□ 0.94
VIM-204ENST00000478746 ATP8B2P98198 1209 aa20.9■□□□□ 0.94
VIM-204ENST00000478746 PLS1Q14651 629 aa20.9■□□□□ 0.94
VIM-204ENST00000478746 FRAT1Q92837 279 aaPredicted RBP20.9■□□□□ 0.94
VIM-204ENST00000478746 CLUAP1Q96AJ1 413 aa20.9■□□□□ 0.94
VIM-204ENST00000478746 CCDC8Q9H0W5 538 aaPredicted RBP20.9■□□□□ 0.94
VIM-204ENST00000478746 MROH8Q9H579 483 aa20.9■□□□□ 0.94
VIM-204ENST00000478746 DBNLQ9UJU6 430 aaKnown RBP20.9■□□□□ 0.94
VIM-204ENST00000478746 TMEM265A0A087WTH1 108 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 A0A1W2PRG0 241 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 MPHOSPH10O00566 681 aaKnown RBP20.89■□□□□ 0.93
VIM-204ENST00000478746 MAP3K12Q12852 859 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 FAM47AQ5JRC9 791 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 NCAPG2Q86XI2 1143 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 ABRAQ8N0Z2 381 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 MB21D1Q8N884 522 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 SSH3Q8TE77 659 aa20.89■□□□□ 0.93
VIM-204ENST00000478746 RNPC3Q96LT9 517 aaKnown RBP20.89■□□□□ 0.93
VIM-204ENST00000478746 TTC28Q96AY4 2481 aa20.88■□□□□ 0.93
VIM-204ENST00000478746 BCAR3O75815 825 aa20.88■□□□□ 0.93
VIM-204ENST00000478746 TMED8Q6PL24 325 aaPredicted RBP20.88■□□□□ 0.93
VIM-204ENST00000478746 MAML3Q96JK9 1138 aa20.88■□□□□ 0.93
VIM-204ENST00000478746 TLR7Q9NYK1 1049 aaKnown RBP20.88■□□□□ 0.93
VIM-204ENST00000478746 SMCHD1A6NHR9 2005 aa20.88■□□□□ 0.93
VIM-204ENST00000478746 ZNF236Q9UL36 1845 aa20.88■□□□□ 0.93
VIM-204ENST00000478746 CLTBP09497 229 aa20.87■□□□□ 0.93
VIM-204ENST00000478746 ITGB8P26012 769 aa20.87■□□□□ 0.93
VIM-204ENST00000478746 DSG3P32926 999 aa20.87■□□□□ 0.93
VIM-204ENST00000478746 ANTXR1Q9H6X2 564 aa20.87■□□□□ 0.93
VIM-204ENST00000478746 PHF24Q9UPV7 400 aa20.87■□□□□ 0.93
VIM-204ENST00000478746 CDH23Q9H251 3354 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 RARBP10826 455 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 FCER1AP12319 257 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 RAG1P15918 1043 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 EPHB4P54760 987 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 GABPAQ06546 454 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 EAF2Q96CJ1 260 aaPredicted RBP20.86■□□□□ 0.93
VIM-204ENST00000478746 XPNPEP3Q9NQH7 507 aa20.86■□□□□ 0.93
VIM-204ENST00000478746 ZNFX1Q9P2E3 1918 aaKnown RBP20.85■□□□□ 0.93
VIM-204ENST00000478746 MAGEB6P1A0A0J9YX57 407 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 KIAA0355O15063 1070 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 FLOT1O75955 427 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 GRIN2CQ14957 1233 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 KIAA1755Q5JYT7 1200 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 RNF180Q86T96 592 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 RIOK1Q9BRS2 568 aaKnown RBP20.85■□□□□ 0.93
VIM-204ENST00000478746 MCM9Q9NXL9 1143 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 NRBP1Q9UHY1 535 aa20.85■□□□□ 0.93
VIM-204ENST00000478746 NOP58Q9Y2X3 529 aaKnown RBP20.85■□□□□ 0.93
VIM-204ENST00000478746 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.84■□□□□ 0.93
VIM-204ENST00000478746 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.84■□□□□ 0.93
VIM-204ENST00000478746 TJAP1Q5JTD0 557 aa20.84■□□□□ 0.93
VIM-204ENST00000478746 SAMD1Q6SPF0 538 aaPredicted RBP20.84■□□□□ 0.93
VIM-204ENST00000478746 TMEM57Q8N5G2 664 aa20.84■□□□□ 0.93
VIM-204ENST00000478746 ATG4CQ96DT6 458 aa20.84■□□□□ 0.93
VIM-204ENST00000478746 TMEM39AQ9NV64 488 aa20.84■□□□□ 0.93
VIM-204ENST00000478746 PQBP1O60828 265 aaKnown RBP20.83■□□□□ 0.93
VIM-204ENST00000478746 SLC25A27O95847 323 aa20.83■□□□□ 0.93
VIM-204ENST00000478746 PGK1P00558 417 aa20.83■□□□□ 0.93
VIM-204ENST00000478746 FPGSQ05932 587 aa20.83■□□□□ 0.93
VIM-204ENST00000478746 TMEM179Q6ZVK1 233 aa20.83■□□□□ 0.93
VIM-204ENST00000478746 CRNKL1Q9BZJ0 848 aaKnown RBP20.83■□□□□ 0.93
VIM-204ENST00000478746 DNAJB2P25686 324 aa20.82■□□□□ 0.92
VIM-204ENST00000478746 EVX2Q03828 476 aa20.82■□□□□ 0.92
VIM-204ENST00000478746 SPICE1Q8N0Z3 855 aa20.82■□□□□ 0.92
VIM-204ENST00000478746 MMP19Q99542 508 aa20.82■□□□□ 0.92
VIM-204ENST00000478746 A0A1W2PQ45 241 aaPredicted RBP20.81■□□□□ 0.92
VIM-204ENST00000478746 A0A1W2PQY0 241 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 TNFRSF10AO00220 468 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 TMEM132BQ14DG7 1078 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 USP38Q8NB14 1042 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 TINF2Q9BSI4 451 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 ZNF576Q9H609 170 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 C1orf115Q9H7X2 142 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 ARHGEF10LQ9HCE6 1279 aa20.81■□□□□ 0.92
VIM-204ENST00000478746 DCDC2CA8MYV0 355 aa20.8■□□□□ 0.92
VIM-204ENST00000478746 PGK2P07205 417 aa20.8■□□□□ 0.92
VIM-204ENST00000478746 TAL1P17542 331 aaPredicted RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms