RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 MAPK4P31152 587 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 B4GALNT3Q6L9W6 998 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 POTEEQ6S8J3 1075 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 LBX2Q6XYB7 198 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 CCAR1Q8IX12 1150 aaKnown RBP12.16□□□□□ -0.46
SF3A3-204ENST00000462258 STK11IPQ8N1F8 1099 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 SOCS4Q8WXH5 440 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 LPAR1Q92633 364 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 EVI5LQ96CN4 794 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 SHISA4Q96DD7 197 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 NACAP1Q9BZK3 213 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 RNF208Q9H0X6 261 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 PORCNQ9H237 461 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 VCPKMTQ9H867 229 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 TMX2Q9Y320 296 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 RABGAP1Q9Y3P9 1069 aa12.16□□□□□ -0.46
SF3A3-204ENST00000462258 PATL2C9JE40 543 aaKnown RBP12.15□□□□□ -0.46
SF3A3-204ENST00000462258 HMGCRP04035 888 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 RASA1P20936 1047 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 CCNA1P78396 465 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 ATP2B2Q01814 1243 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 KIAA1755Q5JYT7 1200 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 PRPF38BQ5VTL8 546 aaKnown RBP12.15□□□□□ -0.46
SF3A3-204ENST00000462258 GPR142Q7Z601 462 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 IFNL3Q8IZI9 196 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 SPICE1Q8N0Z3 855 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 NAPBQ9H115 298 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 UNC93B1Q9H1C4 597 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 KANSL2Q9H9L4 492 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 CWC22Q9HCG8 908 aaKnown RBP12.15□□□□□ -0.46
SF3A3-204ENST00000462258 GJD2Q9UKL4 321 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 SUPT16HQ9Y5B9 1047 aaKnown RBP12.15□□□□□ -0.46
SF3A3-204ENST00000462258 PLIN4Q96Q06 1357 aa12.15□□□□□ -0.46
SF3A3-204ENST00000462258 WDR46O15213 610 aaKnown RBP12.14□□□□□ -0.47
SF3A3-204ENST00000462258 IGHDP01880 384 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 GJB1P08034 283 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 EEF2P13639 858 aaKnown RBP12.14□□□□□ -0.47
SF3A3-204ENST00000462258 CYP2B6P20813 491 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 GJA8P48165 433 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 Q3C1V9 767 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 CCDC129Q6ZRS4 1044 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 PLEKHH3Q7Z736 793 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 CHD1LQ86WJ1 897 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 SIAH1Q8IUQ4 282 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 NKX2-3Q8TAU0 364 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 NUDT12Q9BQG2 462 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.14□□□□□ -0.47
SF3A3-204ENST00000462258 MKNK2Q9HBH9 465 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 ZNF287Q9HBT7 754 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 BTBD7Q9P203 1132 aa12.14□□□□□ -0.47
SF3A3-204ENST00000462258 PRDM1O75626 825 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 FLOT1O75955 427 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 RGS2P41220 211 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 NUCB1Q02818 461 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 COG2Q14746 738 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 WDR78Q5VTH9 848 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 U2AF1L4Q8WU68 220 aaKnown RBP12.13□□□□□ -0.47
SF3A3-204ENST00000462258 TRIB2Q92519 343 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 APBA2Q99767 749 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 GOPCQ9HD26 462 aa12.13□□□□□ -0.47
SF3A3-204ENST00000462258 A0A0D9SFI3 127 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 TRIM6-TRIM34B2RNG4 842 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 FOXP2O15409 715 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 RAD21O60216 631 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 SLC3A2P08195 630 aaKnown RBP12.12□□□□□ -0.47
SF3A3-204ENST00000462258 ZKSCAN1P17029 563 aaPredicted RBP12.12□□□□□ -0.47
SF3A3-204ENST00000462258 PPARAQ07869 468 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 MORN1Q5T089 497 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 ATG4CQ96DT6 458 aa12.12□□□□□ -0.47
SF3A3-204ENST00000462258 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.12□□□□□ -0.47
SF3A3-204ENST00000462258 PAK6Q9NQU5 681 aaPredicted RBP12.12□□□□□ -0.47
SF3A3-204ENST00000462258 PLXNA1Q9UIW2 1896 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 IGKV6D-41A0A0C4DH26 115 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 XRCC5P13010 732 aaKnown RBP12.11□□□□□ -0.47
SF3A3-204ENST00000462258 DSG3P32926 999 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 IRX6P78412 446 aaPredicted RBP12.11□□□□□ -0.47
SF3A3-204ENST00000462258 PDE4BQ07343 736 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 TRIM32Q13049 653 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 GRB14Q14449 540 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 VPS53Q5VIR6 699 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 SAMD1Q6SPF0 538 aaPredicted RBP12.11□□□□□ -0.47
SF3A3-204ENST00000462258 TICAM2Q86XR7 235 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 ZNF444Q8N0Y2 327 aaPredicted RBP12.11□□□□□ -0.47
SF3A3-204ENST00000462258 MB21D1Q8N884 522 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 USP6NLQ92738 828 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 RILPL2Q969X0 211 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 FAM227BQ96M60 508 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 DEFB118Q96PH6 123 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 SPATC1LQ9H0A9 340 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 HELLSQ9NRZ9 838 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 HOXC10Q9NYD6 342 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 IVNS1ABPQ9Y6Y0 642 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 ALPK3Q96L96 1907 aa12.11□□□□□ -0.47
SF3A3-204ENST00000462258 SLC15A5A6NIM6 579 aa12.1□□□□□ -0.47
SF3A3-204ENST00000462258 FARP2O94887 1054 aaPredicted RBP12.1□□□□□ -0.47
SF3A3-204ENST00000462258 SGPL1O95470 568 aa12.1□□□□□ -0.47
SF3A3-204ENST00000462258 TSPY3P0CV98 308 aa12.1□□□□□ -0.47
SF3A3-204ENST00000462258 TSPY8P0CW00 308 aa12.1□□□□□ -0.47
SF3A3-204ENST00000462258 PRKAR2AP13861 404 aaKnown RBP12.1□□□□□ -0.47
SF3A3-204ENST00000462258 PTPREP23469 700 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms