RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 PEX10O60683 326 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 EEF2P13639 858 aaKnown RBP19.23■□□□□ 0.67
COL7A1-203ENST00000459756 ELNP15502 786 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 CCNA1P78396 465 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 MTFR1Q15390 333 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 PLEKHM2Q8IWE5 1019 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 TANGO6Q9C0B7 1094 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 NAPBQ9H115 298 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 OSBPL3Q9H4L5 887 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 HOXC10Q9NYD6 342 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 GJD2Q9UKL4 321 aa19.23■□□□□ 0.67
COL7A1-203ENST00000459756 GREB1LQ9C091 1923 aaPredicted RBP19.23■□□□□ 0.67
COL7A1-203ENST00000459756 SPDYE16A6NNV3 312 aaPredicted RBP19.22■□□□□ 0.67
COL7A1-203ENST00000459756 SLC3A2P08195 630 aaKnown RBP19.22■□□□□ 0.67
COL7A1-203ENST00000459756 CCL5P13501 91 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 ATP2B2Q01814 1243 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 COG2Q14746 738 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 Q3C1V9 767 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 STK11IPQ8N1F8 1099 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 SOCS4Q8WXH5 440 aa19.22■□□□□ 0.67
COL7A1-203ENST00000459756 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.22■□□□□ 0.67
COL7A1-203ENST00000459756 TRIM6-TRIM34B2RNG4 842 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 WDR46O15213 610 aaKnown RBP19.21■□□□□ 0.67
COL7A1-203ENST00000459756 CNMDO75829 334 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 INHAP05111 366 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 PDE4BQ07343 736 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 KIAA1755Q5JYT7 1200 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 PDE4DIPQ5VU43 2346 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 CCDC129Q6ZRS4 1044 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 ZNF444Q8N0Y2 327 aaPredicted RBP19.21■□□□□ 0.67
COL7A1-203ENST00000459756 SPICE1Q8N0Z3 855 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 NKX2-3Q8TAU0 364 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 PORCNQ9H237 461 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 GOPCQ9HD26 462 aa19.21■□□□□ 0.67
COL7A1-203ENST00000459756 PPARAQ07869 468 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 MCMDC2Q4G0Z9 681 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 PLEKHH3Q7Z736 793 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 NUDT12Q9BQG2 462 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 RNF208Q9H0X6 261 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 PLXNB2O15031 1838 aa19.2■□□□□ 0.66
COL7A1-203ENST00000459756 FOXP2O15409 715 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 FLOT1O75955 427 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 HMGCRP04035 888 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 GJB1P08034 283 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 XRCC5P13010 732 aaKnown RBP19.19■□□□□ 0.66
COL7A1-203ENST00000459756 IRX6P78412 446 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-203ENST00000459756 GPR142Q7Z601 462 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 MB21D1Q8N884 522 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 RILPL2Q969X0 211 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 FAM227BQ96M60 508 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 UNC93B1Q9H1C4 597 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 CWC22Q9HCG8 908 aaKnown RBP19.19■□□□□ 0.66
COL7A1-203ENST00000459756 BTBD7Q9P203 1132 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 NYAP2Q9P242 653 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 RLFQ13129 1914 aa19.19■□□□□ 0.66
COL7A1-203ENST00000459756 IGKV6D-41A0A0C4DH26 115 aa19.18■□□□□ 0.66
COL7A1-203ENST00000459756 A0A0D9SFI3 127 aa19.18■□□□□ 0.66
COL7A1-203ENST00000459756 PRDM1O75626 825 aa19.18■□□□□ 0.66
COL7A1-203ENST00000459756 ALX1Q15699 326 aa19.18■□□□□ 0.66
COL7A1-203ENST00000459756 MORN1Q5T089 497 aa19.18■□□□□ 0.66
COL7A1-203ENST00000459756 A0A0G2JMZ2 1700 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 CYP2B6P20813 491 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 DSG3P32926 999 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 GJA8P48165 433 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 NMIQ13287 307 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-203ENST00000459756 VPS53Q5VIR6 699 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 TRMT44Q8IYL2 757 aaKnown RBP19.17■□□□□ 0.66
COL7A1-203ENST00000459756 USP6NLQ92738 828 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 SYNPO2Q9UMS6 1093 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 PLIN4Q96Q06 1357 aa19.17■□□□□ 0.66
COL7A1-203ENST00000459756 TSPY3P0CV98 308 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 TSPY8P0CW00 308 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 RGS2P41220 211 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 WDR78Q5VTH9 848 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 NEDD1Q8NHV4 660 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 MTMR4Q9NYA4 1195 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 ANAPC4Q9UJX5 808 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 IVNS1ABPQ9Y6Y0 642 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 PARP14Q460N5 1801 aa19.16■□□□□ 0.66
COL7A1-203ENST00000459756 SLC15A5A6NIM6 579 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 RAD21O60216 631 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 CAPN2P17655 700 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 SDSP20132 328 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 MFAP1P55081 439 aaKnown RBP19.15■□□□□ 0.66
COL7A1-203ENST00000459756 U2AF1L4Q8WU68 220 aaKnown RBP19.15■□□□□ 0.66
COL7A1-203ENST00000459756 TRIB2Q92519 343 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 MKL1Q969V6 931 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 SHISA4Q96DD7 197 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 CEP95Q96GE4 821 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 APBA2Q99767 749 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 SPATC1LQ9H0A9 340 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 PAK6Q9NQU5 681 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-203ENST00000459756 CLIP2Q9UDT6 1046 aa19.15■□□□□ 0.66
COL7A1-203ENST00000459756 MYH4Q9Y623 1939 aa19.14■□□□□ 0.65
COL7A1-203ENST00000459756 F5H6K3 240 aa19.14■□□□□ 0.65
COL7A1-203ENST00000459756 TTLL1O95922 423 aa19.14■□□□□ 0.65
COL7A1-203ENST00000459756 ZKSCAN1P17029 563 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-203ENST00000459756 PTPREP23469 700 aa19.14■□□□□ 0.65
COL7A1-203ENST00000459756 TFAP4Q01664 338 aa19.14■□□□□ 0.65
COL7A1-203ENST00000459756 KLRC3Q07444 240 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms