RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 EPHB4P54760 987 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 CFAP61Q8NHU2 1237 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 CHPF2Q9P2E5 772 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 IRS4O14654 1257 aaPredicted RBP14.67□□□□□ -0.06
USP40-208ENST00000450966 CORO7P57737 925 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 CC2D1AQ6P1N0 951 aaPredicted RBP14.67□□□□□ -0.06
USP40-208ENST00000450966 BRF1Q92994 677 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 IWS1Q96ST2 819 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 XPO4Q9C0E2 1151 aaKnown RBP14.67□□□□□ -0.06
USP40-208ENST00000450966 NFATC2IPQ8NCF5 419 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 NPC1L1Q9UHC9 1359 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 UGGT1Q9NYU2 1555 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 TMED10P49755 219 aaKnown RBP14.66□□□□□ -0.06
USP40-208ENST00000450966 MYO1AQ9UBC5 1043 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 DENND2AQ9ULE3 1009 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 MAGI3Q5TCQ9 1506 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 FAM196AQ6ZSG2 479 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 TDRD7Q8NHU6 1098 aaKnown RBP14.66□□□□□ -0.06
USP40-208ENST00000450966 NCOA7Q8NI08 942 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 PARP2Q9UGN5 583 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.66□□□□□ -0.06
USP40-208ENST00000450966 BRAPQ7Z569 592 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 TUBB6Q9BUF5 446 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 OSBPL1AQ9BXW6 950 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 MAP3K19Q56UN5 1328 aa14.66□□□□□ -0.06
USP40-208ENST00000450966 TMEM232C9JQI7 657 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 AK2P54819 239 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 ESR2Q92731 530 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 STAMBPL1Q96FJ0 436 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 CFAP73A6NFT4 308 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 UBA7P41226 1012 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 GYS2P54840 703 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 FAM133BQ5BKY9 247 aaKnown RBP14.65□□□□□ -0.06
USP40-208ENST00000450966 TCERG1LQ5VWI1 586 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 A0A1W2PP64 1363 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 CALM1P0DP23 149 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 CALM2P0DP24 149 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 CALM3P0DP25 149 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 FAM98CQ17RN3 349 aaKnown RBP14.65□□□□□ -0.06
USP40-208ENST00000450966 TBC1D5Q92609 795 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 HVCN1Q96D96 273 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 EYA1Q99502 592 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 NUP58Q9BVL2 599 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 EXOC1Q9NV70 894 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 CHMP2AO43633 222 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 TTC6Q86TZ1 520 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 ERMNQ8TAM6 284 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 LZICQ8WZA0 190 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 FERMT1Q9BQL6 677 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 HECW2Q9P2P5 1572 aa14.65□□□□□ -0.06
USP40-208ENST00000450966 LMNB2Q03252 620 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 MTHFSDQ2M296 383 aaKnown RBP14.64□□□□□ -0.07
USP40-208ENST00000450966 SYCP3Q8IZU3 236 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 VAT1LQ9HCJ6 419 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 PTPRKQ15262 1439 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 KDM5CP41229 1560 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 SH3TC1Q8TE82 1336 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 TMEM94Q12767 1356 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 ARHGAP10A1A4S6 786 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 ZNF653Q96CK0 615 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 RAB17Q9H0T7 212 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 RMI1Q9H9A7 625 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 CYP7A1P22680 504 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 PLBD2Q8NHP8 589 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 DRC3Q9H069 523 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 WWC3Q9ULE0 1092 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 G3BP2Q9UN86 482 aaKnown RBP14.64□□□□□ -0.07
USP40-208ENST00000450966 ADGBQ8N7X0 1667 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 DYTNA2CJ06 578 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 TPD52L2O43399 206 aaKnown RBP14.64□□□□□ -0.07
USP40-208ENST00000450966 CCDC80Q76M96 950 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 MTX1Q13505 466 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 TBC1D22AQ8WUA7 517 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 MMRN2Q9H8L6 949 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 STOML1Q9UBI4 398 aa14.64□□□□□ -0.07
USP40-208ENST00000450966 CCDC169A6NNP5 214 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 STX10O60499 249 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 TSPY3P0CV98 308 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 TSPY8P0CW00 308 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 METAP2P50579 478 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP40-208ENST00000450966 ENAHQ8N8S7 591 aaPredicted RBP14.63□□□□□ -0.07
USP40-208ENST00000450966 NAP1L4Q99733 375 aaKnown RBP14.63□□□□□ -0.07
USP40-208ENST00000450966 MLKLQ8NB16 471 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 ORAI2Q96SN7 254 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 KDM6BO15054 1643 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 ZBTB10Q96DT7 871 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 SNRKQ9NRH2 765 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 KRT75O95678 551 aa14.63□□□□□ -0.07
USP40-208ENST00000450966 TPP2P29144 1249 aaPredicted RBP14.63□□□□□ -0.07
USP40-208ENST00000450966 NSFL1CQ9UNZ2 370 aaKnown RBP14.63□□□□□ -0.07
USP40-208ENST00000450966 I3L4J1 428 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 HNRNPH1P31943 449 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 NOP14P78316 857 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 HS2ST1Q7LGA3 356 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 TBCAO75347 108 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 LDHBP07195 334 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 AFMP43652 599 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 DEUP1Q05D60 604 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 SEL1L2Q5TEA6 688 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 SUGP1Q8IWZ8 645 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms