RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CLEC10AQ8IUN9 316 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 SMC5Q8IY18 1101 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 SOCS4Q8WXH5 440 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 NUDT12Q9BQG2 462 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 FSD1Q9BTV5 496 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 SH2D4AQ9H788 454 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 PAK6Q9NQU5 681 aaPredicted RBP23.22■■□□□ 1.31
USP40-207ENST00000450940 HOXC10Q9NYD6 342 aa23.22■■□□□ 1.31
USP40-207ENST00000450940 SGPL1O95470 568 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 HMGCRP04035 888 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 PDE1AP54750 535 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 CCNA1P78396 465 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 MORN1Q5T089 497 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 GPR142Q7Z601 462 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 UBE2Q1Q7Z7E8 422 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 U2AF1L4Q8WU68 220 aaKnown RBP23.21■■□□□ 1.31
USP40-207ENST00000450940 SEC62Q99442 399 aaKnown RBP23.21■■□□□ 1.31
USP40-207ENST00000450940 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.21■■□□□ 1.31
USP40-207ENST00000450940 VCPKMTQ9H867 229 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 BTBD7Q9P203 1132 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 A0A0G2JMZ2 1700 aa23.21■■□□□ 1.31
USP40-207ENST00000450940 RASA1P20936 1047 aa23.2■■□□□ 1.3
USP40-207ENST00000450940 PLEKHH3Q7Z736 793 aa23.2■■□□□ 1.3
USP40-207ENST00000450940 TICAM2Q86XR7 235 aa23.2■■□□□ 1.3
USP40-207ENST00000450940 IFNL3Q8IZI9 196 aa23.2■■□□□ 1.3
USP40-207ENST00000450940 RWDD1Q9H446 243 aaPredicted RBP23.2■■□□□ 1.3
USP40-207ENST00000450940 MINDY4BA8MYZ0 360 aa23.19■■□□□ 1.3
USP40-207ENST00000450940 EEF2P13639 858 aaKnown RBP23.19■■□□□ 1.3
USP40-207ENST00000450940 EVI5LQ96CN4 794 aa23.19■■□□□ 1.3
USP40-207ENST00000450940 CCAR1Q8IX12 1150 aaKnown RBP23.18■■□□□ 1.3
USP40-207ENST00000450940 TRMT44Q8IYL2 757 aaKnown RBP23.18■■□□□ 1.3
USP40-207ENST00000450940 EXOC6Q8TAG9 804 aa23.18■■□□□ 1.3
USP40-207ENST00000450940 TRIB2Q92519 343 aa23.18■■□□□ 1.3
USP40-207ENST00000450940 CRISPLD2Q9H0B8 497 aa23.18■■□□□ 1.3
USP40-207ENST00000450940 WDR46O15213 610 aaKnown RBP23.17■■□□□ 1.3
USP40-207ENST00000450940 APPP05067 770 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 CYP2B6P20813 491 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 DSG3P32926 999 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 TDO2P48775 406 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 MAP3K21Q5TCX8 1036 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 NACAP1Q9BZK3 213 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 TANGO6Q9C0B7 1094 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 MKNK2Q9HBH9 465 aa23.17■■□□□ 1.3
USP40-207ENST00000450940 RPTORQ8N122 1335 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 IGKV6D-41A0A0C4DH26 115 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 IGHDP01880 384 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 RGS2P41220 211 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 MB21D1Q8N884 522 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 DEFB118Q96PH6 123 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.16■■□□□ 1.3
USP40-207ENST00000450940 ZNF287Q9HBT7 754 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 NYAP2Q9P242 653 aa23.16■■□□□ 1.3
USP40-207ENST00000450940 SLC15A5A6NIM6 579 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 FOXP2O15409 715 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 PTPREP23469 700 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 TRIM32Q13049 653 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 MAP2K5Q13163 448 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 SPICE1Q8N0Z3 855 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 LNPKQ9C0E8 428 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 ADAMTS5Q9UNA0 930 aa23.15■■□□□ 1.3
USP40-207ENST00000450940 MYH4Q9Y623 1939 aa23.14■■□□□ 1.3
USP40-207ENST00000450940 HOXC6P09630 235 aa23.14■■□□□ 1.29
USP40-207ENST00000450940 SHCBP1Q8NEM2 672 aa23.14■■□□□ 1.29
USP40-207ENST00000450940 APBA2Q99767 749 aa23.14■■□□□ 1.29
USP40-207ENST00000450940 MOV10L1Q9BXT6 1211 aaKnown RBP23.14■■□□□ 1.29
USP40-207ENST00000450940 GOPCQ9HD26 462 aa23.14■■□□□ 1.29
USP40-207ENST00000450940 HMX1Q9NP08 348 aaPredicted RBP23.14■■□□□ 1.29
USP40-207ENST00000450940 COL11A1P12107 1806 aaPredicted RBP23.13■■□□□ 1.29
USP40-207ENST00000450940 ZNF236Q9UL36 1845 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 FLOT1O75955 427 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 ATP2B2Q01814 1243 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 NUCB1Q02818 461 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 GRB14Q14449 540 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 ZNF444Q8N0Y2 327 aaPredicted RBP23.13■■□□□ 1.29
USP40-207ENST00000450940 SPATC1LQ9H0A9 340 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 NAPBQ9H115 298 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 HELLSQ9NRZ9 838 aa23.13■■□□□ 1.29
USP40-207ENST00000450940 TFRCP02786 760 aaKnown RBP23.12■■□□□ 1.29
USP40-207ENST00000450940 ZKSCAN1P17029 563 aaPredicted RBP23.12■■□□□ 1.29
USP40-207ENST00000450940 CHD1LQ86WJ1 897 aa23.12■■□□□ 1.29
USP40-207ENST00000450940 STK11IPQ8N1F8 1099 aa23.12■■□□□ 1.29
USP40-207ENST00000450940 MKL1Q969V6 931 aa23.12■■□□□ 1.29
USP40-207ENST00000450940 ATG4CQ96DT6 458 aa23.12■■□□□ 1.29
USP40-207ENST00000450940 OSBPL3Q9H4L5 887 aa23.12■■□□□ 1.29
USP40-207ENST00000450940 CWC22Q9HCG8 908 aaKnown RBP23.12■■□□□ 1.29
USP40-207ENST00000450940 STRNO43815 780 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 FARP2O94887 1054 aaPredicted RBP23.11■■□□□ 1.29
USP40-207ENST00000450940 IGHA2P01877 340 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 PDE4BQ07343 736 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 PPARAQ07869 468 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 CCL14Q16627 93 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 CCDC129Q6ZRS4 1044 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 SYNPO2Q9UMS6 1093 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 SUPT16HQ9Y5B9 1047 aaKnown RBP23.11■■□□□ 1.29
USP40-207ENST00000450940 IVNS1ABPQ9Y6Y0 642 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 ZNFX1Q9P2E3 1918 aaKnown RBP23.11■■□□□ 1.29
USP40-207ENST00000450940 PLIN4Q96Q06 1357 aa23.11■■□□□ 1.29
USP40-207ENST00000450940 PRDM1O75626 825 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 PRKAR2AP13861 404 aaKnown RBP23.1■■□□□ 1.29
USP40-207ENST00000450940 CACNB2Q08289 660 aaPredicted RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms