RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 KCNA10Q16322 511 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 TIGD5Q53EQ6 642 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 DBX2Q6ZNG2 339 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 CYB5D2Q8WUJ1 264 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 CD320Q9NPF0 282 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 SMG5Q9UPR3 1016 aaKnown RBP6.71□□□□□ -1.34
VPS29-202ENST00000447578 PCDHA11Q9Y5I1 949 aa6.71□□□□□ -1.34
VPS29-202ENST00000447578 CILPO75339 1184 aa6.7□□□□□ -1.34
VPS29-202ENST00000447578 CTSWP56202 376 aa6.7□□□□□ -1.34
VPS29-202ENST00000447578 DAB2P98082 770 aa6.7□□□□□ -1.34
VPS29-202ENST00000447578 PSMD2Q13200 908 aa6.7□□□□□ -1.34
VPS29-202ENST00000447578 NOC4LQ9BVI4 516 aaKnown RBP6.7□□□□□ -1.34
VPS29-202ENST00000447578 FAM221AA4D161 298 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 TCAF2A6NFQ2 919 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 CHURC1-FNTBB4DL54 471 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 F13A1P00488 732 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 PF4P02776 101 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 MED14OSP0DP75 135 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 RLBP1P12271 317 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 LTKP29376 864 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 CAMK2GQ13555 558 aaPredicted RBP6.69□□□□□ -1.34
VPS29-202ENST00000447578 TMEM201Q5SNT2 666 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 PDZD8Q8NEN9 1154 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 BAHD1Q8TBE0 780 aaPredicted RBP6.69□□□□□ -1.34
VPS29-202ENST00000447578 EBF1Q9UH73 591 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 KCNH3Q9ULD8 1083 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 USP31Q70CQ4 1352 aa6.69□□□□□ -1.34
VPS29-202ENST00000447578 SHISA3A0PJX4 238 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 GRIN3BO60391 1043 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 PSPNO60542 156 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 BPNT1O95861 308 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 GLDCP23378 1020 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 TNNI2P48788 182 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 GALK1P51570 392 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 YARSP54577 528 aaKnown RBP6.68□□□□□ -1.34
VPS29-202ENST00000447578 RNF141Q8WVD5 230 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 SLC26A8Q96RN1 970 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 REV1Q9UBZ9 1251 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 KLHL3Q9UH77 587 aa6.68□□□□□ -1.34
VPS29-202ENST00000447578 DNAJA2O60884 412 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 ST13P50502 369 aaKnown RBP6.67□□□□□ -1.34
VPS29-202ENST00000447578 LMNB2Q03252 620 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 CCDC84Q86UT8 332 aaPredicted RBP6.67□□□□□ -1.34
VPS29-202ENST00000447578 AMIGO3Q86WK7 504 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 SLFN12Q8IYM2 578 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 GATAD2BQ8WXI9 593 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 KREMEN1Q96MU8 473 aa6.67□□□□□ -1.34
VPS29-202ENST00000447578 POLR3KQ9Y2Y1 108 aaPredicted RBP6.67□□□□□ -1.34
VPS29-202ENST00000447578 INHBBP09529 407 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 LINC00310P59036 64 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 XPCQ01831 940 aaPredicted RBP6.66□□□□□ -1.34
VPS29-202ENST00000447578 FAM160A1Q05DH4 1040 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 CIAPIN1Q6FI81 312 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 ZNF605Q86T29 641 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 OXR1Q8N573 874 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 MCOLN1Q9GZU1 580 aa6.66□□□□□ -1.34
VPS29-202ENST00000447578 MYOCOSA0A1B0GUC4 107 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 FITM1A5D6W6 292 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 NUAK1O60285 661 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 HTR3BO95264 441 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 TAGLNQ01995 201 aaKnown RBP6.65□□□□□ -1.34
VPS29-202ENST00000447578 TEKQ02763 1124 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 KRTAP1-1Q07627 177 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 TMC4Q7Z404 712 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 LILRA2Q8N149 483 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 FBXO27Q8NI29 283 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 RHOVQ96L33 236 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 KIF2CQ99661 725 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 IRF2BPLQ9H1B7 796 aa6.65□□□□□ -1.34
VPS29-202ENST00000447578 MINDY4BA8MYZ0 360 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 GBP2P32456 591 aaPredicted RBP6.64□□□□□ -1.35
VPS29-202ENST00000447578 DHX38Q92620 1227 aaKnown RBP6.64□□□□□ -1.35
VPS29-202ENST00000447578 INTS4Q96HW7 963 aaKnown RBP6.64□□□□□ -1.35
VPS29-202ENST00000447578 CCDC74BQ96LY2 380 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 TMEM74Q96NL1 305 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 SGPP1Q9BX95 441 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 SLC6A17Q9H1V8 727 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 GPR160Q9UJ42 338 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 YBX2Q9Y2T7 364 aaKnown RBP6.64□□□□□ -1.35
VPS29-202ENST00000447578 PRR36Q9H6K5 1346 aa6.64□□□□□ -1.35
VPS29-202ENST00000447578 RBM47A0AV96 593 aaKnown RBP6.63□□□□□ -1.35
VPS29-202ENST00000447578 DLG4P78352 724 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 NR0B2Q15466 257 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 DIEXFQ68CQ4 756 aaKnown RBP6.63□□□□□ -1.35
VPS29-202ENST00000447578 DNAJC14Q6Y2X3 702 aaPredicted RBP6.63□□□□□ -1.35
VPS29-202ENST00000447578 IRF2BP1Q8IU81 584 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 RELL1Q8IUW5 271 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 SIRT2Q8IXJ6 389 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 PHACTR4Q8IZ21 702 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 GOLM1Q8NBJ4 401 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 SYTL4Q96C24 671 aaPredicted RBP6.63□□□□□ -1.35
VPS29-202ENST00000447578 SHISA4Q96DD7 197 aa6.63□□□□□ -1.35
VPS29-202ENST00000447578 EFEMP2O95967 443 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 PDE6BP35913 854 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 CLEC16AQ2KHT3 1053 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 FBXO33Q7Z6M2 555 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 VWCEQ96DN2 955 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 ASPNQ9BXN1 380 aa6.62□□□□□ -1.35
VPS29-202ENST00000447578 CWC22Q9HCG8 908 aaKnown RBP6.62□□□□□ -1.35
VPS29-202ENST00000447578 NOTOA8MTQ0 251 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms