RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 FCER1AP12319 257 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 MYF5P13349 255 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 USP14P54578 494 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 UCNP55089 124 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 SMAD3P84022 425 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 NFATC3Q12968 1075 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CRHR2Q13324 411 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 GJC2Q5T442 439 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 LIPNQ5VXI9 398 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF574Q6ZN55 896 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKRD44Q8N8A2 993 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CCDC112Q8NEF3 446 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 DDX12PQ92771 950 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 KLHL5Q96PQ7 755 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CACNA1IQ9P0X4 2223 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 A6NCN8 305 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ATG13O75143 517 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 IRX5P78411 483 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 SPEM2Q0P670 501 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 LRRC32Q14392 662 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 MEPCEQ7L2J0 689 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 USP37Q86T82 979 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 GLG1Q92896 1179 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CSRNP2Q9H175 543 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKRD11Q6UB99 2663 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CASKIN1Q8WXD9 1431 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 ZFYVE26Q68DK2 2539 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 WDR17Q8IZU2 1322 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 MYBL2P10244 700 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 GSTO1P78417 241 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 UTP14CQ5TAP6 766 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 FHL5Q5TD97 284 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 BTBD8Q5XKL5 378 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 DNAJC5GQ8N7S2 189 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 TBC1D16Q8TBP0 767 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 NEUROD6Q96NK8 337 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 GBP3Q9H0R5 595 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 CGNL1Q0VF96 1302 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 OPHN1O60890 802 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 KIF4AO95239 1232 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 GJB6O95452 261 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 MAN1A1P33908 653 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 SCNN1AP37088 669 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 SP4Q02446 784 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 E2F5Q15329 346 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 CYP4A22Q5TCH4 519 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 UNQ6494/PRO21346Q6UXR6 183 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 UBALD2Q8IYN6 164 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 SAMD11Q96NU1 681 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 EMILIN2Q9BXX0 1053 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 KRT23Q9C075 422 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 RASSF4Q9H2L5 321 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 NLRP1Q9C000 1473 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 PRDM2Q13029 1718 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 TTC24A2A3L6 582 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 RNF212BA8MTL3 300 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 RSPH10B2B2RC85 870 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 GALR2O43603 387 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 RSPH10BP0C881 870 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 ACADMP11310 421 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 AKR1A1P14550 325 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 CRKLP46109 303 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 ALDH7A1P49419 539 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 AK2P54819 239 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 C21orf59P57076 290 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 DMTNQ08495 405 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 TRAF1Q13077 416 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 MTFR1Q15390 333 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 LRIT3Q3SXY7 679 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 USP39Q53GS9 565 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 PSAPL1Q6NUJ1 521 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 ERICH6Q7L0X2 663 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 HHIPL1Q96JK4 782 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 EHMT1Q9H9B1 1298 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 THG1LQ9NWX6 298 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 ADD3Q9UEY8 706 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 PPP2R3BQ9Y5P8 575 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 NCOA2Q15596 1464 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 HIVEP2P31629 2446 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 SALL1Q9NSC2 1324 aa3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 CDK13Q14004 1512 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-205ENST00000426576 VPS37CA5D8V6 355 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 TBC1D3BA6NDS4 549 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 ATP2C2O75185 946 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 ATP2B4P23634 1241 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 MARCKSP29966 332 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 CXADRP78310 365 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 NUCB2P80303 420 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 TFF2Q03403 129 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 SPRYD7Q5W111 196 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 GPR155Q7Z3F1 870 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 RABEPKQ7Z6M1 372 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 IL22RA1Q8N6P7 574 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 CHDHQ8NE62 594 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC7A3Q8WY07 619 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 ALG1Q9BT22 464 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 PDGFDQ9GZP0 370 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 DEFB129Q9H1M3 183 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 SLKQ9H2G2 1235 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 AZI2Q9H6S1 392 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 307 ms