RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TECPR2O15040 1411 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 FOXP2O15409 715 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 LIG3P49916 1009 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 CTDSPL2Q05D32 466 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 TMEM67Q5HYA8 995 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 RSBN1LQ6PCB5 846 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 DIS3L2Q8IYB7 885 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 MARVELD3Q96A59 401 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 EFCC1Q9HA90 598 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 ANGEL1Q9UNK9 670 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 PXDNQ92626 1479 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 N4BP3O15049 544 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 SAFBQ15424 915 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 TBC1D10CQ8IV04 446 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 TATDN2Q93075 761 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 XAGE2Q96GT9 111 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 EHD4Q9H223 541 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 CABP5Q9NP86 173 aa11.19□□□□□ -0.62
PTCHD4-202ENST00000398738 APOA5Q6Q788 366 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 THEMISQ8N1K5 641 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 RBM46Q8TBY0 533 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 SMARCC1Q92922 1105 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 EPSTI1Q96J88 318 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 MAP3K14Q99558 947 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 BLZF1Q9H2G9 400 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 IFIT3O14879 490 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 RANBP6O60518 1105 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 PPP6R2O75170 966 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 IL15P40933 162 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 HSPA2P54652 639 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 NR1I3Q14994 352 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 NAPGQ99747 312 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 AKAP12Q02952 1782 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 NCAPD2Q15021 1401 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 FAM205CA6NFA0 338 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 EYA2O00167 538 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 MATR3P43243 847 aaKnown RBP eCLIP11.18□□□□□ -0.624e-7■■■□□ 19.2
PTCHD4-202ENST00000398738 MAGEA9P43362 315 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 FILIP1LQ4L180 1135 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 CAGE1Q8TC20 777 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 DEF6Q9H4E7 631 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 TAB2Q9NYJ8 693 aa11.18□□□□□ -0.62
PTCHD4-202ENST00000398738 RNF225M0QZC1 329 aaPredicted RBP11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 A1BGP04217 495 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 SSRP1Q08945 709 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CCDC57Q2TAC2 916 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CTR9Q6PD62 1173 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 MLKLQ8NB16 471 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 ENOX1Q8TC92 643 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CSRNP2Q9H175 543 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 SLC12A7Q9Y666 1083 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CDKL5O76039 1030 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 SNRPA1P09661 255 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 ZNF18P17022 549 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CCT5P48643 541 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 FOXO4P98177 505 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 AFAP1L1Q8TED9 768 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 CHP1Q99653 195 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 TMEM134Q9H6X4 195 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 PSD3Q9NYI0 1048 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 DACH1Q9UI36 760 aa11.17□□□□□ -0.62
PTCHD4-202ENST00000398738 PUS10Q3MIT2 529 aaKnown RBP11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 NOSTRINQ8IVI9 506 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 CCDC148Q8NFR7 591 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 PSMB7Q99436 277 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 MYO6Q9UM54 1294 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 CTNND2Q9UQB3 1225 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 UBN2Q6ZU65 1347 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 KRT9P35527 623 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 TOB1P50616 345 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 RABL6Q3YEC7 729 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 ORAI2Q96SN7 254 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 SLC52A2Q9HAB3 445 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 PLEKHG2Q9H7P9 1386 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 PLEKHG1Q9ULL1 1385 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 ZMYM6O95789 1325 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 ANKARQ7Z5J8 1434 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 FAM71BQ8TC56 605 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 CRACR2AQ9BSW2 395 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 CWC25Q9NXE8 425 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 SAMM50Q9Y512 469 aa11.16□□□□□ -0.62
PTCHD4-202ENST00000398738 SYNRGQ9UMZ2 1314 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 NUTM2BA6NNL0 878 aaPredicted RBP11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 NUTM2EB1AL46 878 aaPredicted RBP11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 MFAP3LO75121 409 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 GYPCP04921 128 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 SYNE4Q8N205 404 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 APPBP2Q92624 585 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 FAM89AQ96GI7 184 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 ACBD3Q9H3P7 528 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 CRYBG1Q9Y4K1 1723 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 USP17L8P0C7I0 530 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 GGCXP38435 758 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 PLCD1P51178 756 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 MNAT1P51948 309 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 ERVK-24P63145 666 aa11.15□□□□□ -0.62
PTCHD4-202ENST00000398738 MORC3Q14149 939 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms