RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 YDJCA8MPS7 323 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 LDHBP07195 334 aaKnown RBP24.71■■□□□ 1.55
TRIM54-202ENST00000380075 ERCC4Q92889 916 aaPredicted RBP24.71■■□□□ 1.55
TRIM54-202ENST00000380075 KCNQ5Q9NR82 932 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 FAM13BQ9NYF5 915 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 KCNH3Q9ULD8 1083 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 SMIM22K7EJ46 135 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 PRDM1O75626 825 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 PKN1Q16512 942 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 TMTC3Q6ZXV5 915 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 PHF20Q9BVI0 1012 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 COA1Q9GZY4 146 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 BRMS1Q9HCU9 246 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 CD209Q9NNX6 404 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 TAOK2Q9UL54 1235 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 ZNRF3Q9ULT6 936 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 PYCARDQ9ULZ3 195 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 MYH2Q9UKX2 1941 aa24.71■■□□□ 1.55
TRIM54-202ENST00000380075 IKBKBO14920 756 aa24.7■■□□□ 1.54
TRIM54-202ENST00000380075 BMP15O95972 392 aa24.7■■□□□ 1.54
TRIM54-202ENST00000380075 CMTR1Q8N1G2 835 aaKnown RBP24.7■■□□□ 1.54
TRIM54-202ENST00000380075 CTCFLQ8NI51 663 aaPredicted RBP24.7■■□□□ 1.54
TRIM54-202ENST00000380075 PRIMPOLQ96LW4 560 aa24.7■■□□□ 1.54
TRIM54-202ENST00000380075 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.69■■□□□ 1.54
TRIM54-202ENST00000380075 FZD9O00144 591 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 LDHCP07864 332 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 KRT2P35908 639 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 KRBA2Q6ZNG9 492 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 CLIC6Q96NY7 704 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 FBXO2Q9UK22 296 aaPredicted RBP24.69■■□□□ 1.54
TRIM54-202ENST00000380075 BAG3O95817 575 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 CCDC178Q5BJE1 867 aa24.69■■□□□ 1.54
TRIM54-202ENST00000380075 SRPRBQ9Y5M8 271 aaKnown RBP24.69■■□□□ 1.54
TRIM54-202ENST00000380075 ROBO3Q96MS0 1386 aa24.68■■□□□ 1.54
TRIM54-202ENST00000380075 PPP4CP60510 307 aa24.68■■□□□ 1.54
TRIM54-202ENST00000380075 NR5A1Q13285 461 aa24.68■■□□□ 1.54
TRIM54-202ENST00000380075 PODNQ7Z5L7 613 aa24.68■■□□□ 1.54
TRIM54-202ENST00000380075 DHX8Q14562 1220 aaKnown RBP24.67■■□□□ 1.54
TRIM54-202ENST00000380075 AMOTL1Q8IY63 956 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 CNNM3Q8NE01 707 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 MKRN1Q9UHC7 482 aaKnown RBP24.67■■□□□ 1.54
TRIM54-202ENST00000380075 MYH6P13533 1939 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 A0A087WWV3 80 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 TSPY2A6NKD2 308 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 IL1R1P14778 569 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 MCM9Q9NXL9 1143 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 NRBP1Q9UHY1 535 aa24.67■■□□□ 1.54
TRIM54-202ENST00000380075 CNTNAP5Q8WYK1 1306 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 MYO1BO43795 1136 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 RAD17O75943 681 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 PLEKHA8P1O95397 391 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 KIF5BP33176 963 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 C12orf60Q5U649 245 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 V9GY48 417 aaPredicted RBP24.66■■□□□ 1.54
TRIM54-202ENST00000380075 ZNF541Q9H0D2 1346 aa24.66■■□□□ 1.54
TRIM54-202ENST00000380075 TRIM75PA6NK02 468 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 USP5P45974 858 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 CXCL9Q07325 125 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 DGKHQ86XP1 1220 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 OXER1Q8TDS5 423 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 CABP5Q9NP86 173 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 VPS54Q9P1Q0 977 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 IMPACTQ9P2X3 320 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 PCDHB6Q9Y5E3 794 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 GSDMDP57764 484 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 KANK3Q6NY19 840 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 ANKS1AQ92625 1134 aa24.65■■□□□ 1.54
TRIM54-202ENST00000380075 UQCRHLA0A096LP55 91 aa24.64■■□□□ 1.54
TRIM54-202ENST00000380075 BIN1O00499 593 aa24.64■■□□□ 1.54
TRIM54-202ENST00000380075 UQCRHP07919 91 aa24.64■■□□□ 1.54
TRIM54-202ENST00000380075 EIF6P56537 245 aaKnown RBP24.64■■□□□ 1.54
TRIM54-202ENST00000380075 LONRF3Q496Y0 759 aa24.64■■□□□ 1.54
TRIM54-202ENST00000380075 METTL16Q86W50 562 aaKnown RBP24.64■■□□□ 1.54
TRIM54-202ENST00000380075 C17orf53Q8N3J3 647 aaPredicted RBP24.64■■□□□ 1.54
TRIM54-202ENST00000380075 JAG2Q9Y219 1238 aa24.64■■□□□ 1.54
TRIM54-202ENST00000380075 CYP2D6P10635 497 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 CCDC144BQ3MJ40 725 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 FBXW7Q969H0 707 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 CCDC34Q96HJ3 373 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 NCAPHQ15003 741 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 FAM47AQ5JRC9 791 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 LRRC8AQ8IWT6 810 aa24.63■■□□□ 1.53
TRIM54-202ENST00000380075 CACTINQ8WUQ7 758 aaKnown RBP24.63■■□□□ 1.53
TRIM54-202ENST00000380075 DICER1Q9UPY3 1922 aaKnown RBP24.62■■□□□ 1.53
TRIM54-202ENST00000380075 GTF2IP78347 998 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 PNOCQ13519 176 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 SRBD1Q8N5C6 995 aaKnown RBP24.62■■□□□ 1.53
TRIM54-202ENST00000380075 SHISA4Q96DD7 197 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 TCP11L1Q9NUJ3 509 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 DYNC1I1O14576 645 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 USP17L8P0C7I0 530 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 MDM2Q00987 491 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-202ENST00000380075 LRMPQ12912 555 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 FERMT2Q96AC1 680 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 OSBPL5Q9H0X9 879 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-202ENST00000380075 KAT14Q9H8E8 782 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 ZNF287Q9HBT7 754 aa24.62■■□□□ 1.53
TRIM54-202ENST00000380075 ZC3H4Q9UPT8 1303 aaKnown RBP24.61■■□□□ 1.53
TRIM54-202ENST00000380075 USP17L3A6NCW0 530 aa24.61■■□□□ 1.53
TRIM54-202ENST00000380075 USP17L4A6NCW7 530 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms