RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 LZTS2Q9BRK4 669 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 FHDC1Q9C0D6 1143 aaPredicted RBP17.89■□□□□ 0.45
LIMS1-202ENST00000338045 MYOZ2Q9NPC6 264 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 TCP10L2B9ZVM9 353 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 EIF6P56537 245 aaKnown RBP17.88■□□□□ 0.45
LIMS1-202ENST00000338045 RTEL1Q9NZ71 1219 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 TMEM63CQ9P1W3 806 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 FAM196BA6NMK8 535 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 MYO1BO43795 1136 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 SNHG28P0DPA3 235 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 XBP1P17861 261 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 PFKFB3Q16875 520 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-202ENST00000338045 CERKLQ49MI3 558 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-202ENST00000338045 CSRNP1Q96S65 589 aa17.88■□□□□ 0.45
LIMS1-202ENST00000338045 FOXP1Q9H334 677 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-202ENST00000338045 HERC5Q9UII4 1024 aaKnown RBP17.88■□□□□ 0.45
LIMS1-202ENST00000338045 SHTN1A0MZ66 631 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 SCG2P13521 617 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 SMARCA1P28370 1054 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 SAFBQ15424 915 aaKnown RBP eCLIP17.87■□□□□ 0.45
LIMS1-202ENST00000338045 SLC35G1Q2M3R5 365 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 PHF20Q9BVI0 1012 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 SPZ1Q9BXG8 430 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 TRIM34Q9BYJ4 488 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 FTOQ9C0B1 505 aaKnown RBP eCLIP17.87■□□□□ 0.45
LIMS1-202ENST00000338045 POLR3EQ9NVU0 708 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 KCNJ14Q9UNX9 436 aa17.87■□□□□ 0.45
LIMS1-202ENST00000338045 hCG_1642624A0A1W2PR95 340 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 CYTH3O43739 400 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 PARP1P09874 1014 aaKnown RBP17.86■□□□□ 0.45
LIMS1-202ENST00000338045 PDHBP11177 359 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 NBPF9Q3BBW0 867 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 DIS3L2Q8IYB7 885 aaKnown RBP17.86■□□□□ 0.45
LIMS1-202ENST00000338045 VPS54Q9P1Q0 977 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 CLIP2Q9UDT6 1046 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 BTBD18B2RXH4 712 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 NASPP49321 788 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-202ENST00000338045 GMPSP49915 693 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-202ENST00000338045 TMEM179Q6ZVK1 233 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 CLEC10AQ8IUN9 316 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 NOSTRINQ8IVI9 506 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 MKL1Q969V6 931 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 PGBD1Q96JS3 809 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 PGAP2Q9UHJ9 254 aa17.86■□□□□ 0.45
LIMS1-202ENST00000338045 KLRF2D3W0D1 207 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 MPHOSPH10O00566 681 aaKnown RBP17.85■□□□□ 0.45
LIMS1-202ENST00000338045 YEATS4O95619 227 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 ZSCAN23Q3MJ62 389 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 USP17L2Q6R6M4 530 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 RASGRP2Q7LDG7 609 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 LRRC47Q8N1G4 583 aaKnown RBP17.85■□□□□ 0.45
LIMS1-202ENST00000338045 KANSL2Q9H9L4 492 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 VEZTQ9HBM0 779 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 NYAP2Q9P242 653 aa17.85■□□□□ 0.45
LIMS1-202ENST00000338045 ZNF541Q9H0D2 1346 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 TBC1D12O60347 775 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 LMNB1P20700 586 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 ZNF445P59923 1031 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 CEBPZQ03701 1054 aaKnown RBP17.84■□□□□ 0.45
LIMS1-202ENST00000338045 GNL2Q13823 731 aaKnown RBP17.84■□□□□ 0.45
LIMS1-202ENST00000338045 NPY5RQ15761 445 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 ASPRV1Q53RT3 343 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 MICALL2Q8IY33 904 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 LINC00301Q8NCQ3 95 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 SYAP1Q96A49 352 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-202ENST00000338045 BAZ2BQ9UIF8 2168 aaKnown RBP17.84■□□□□ 0.45
LIMS1-202ENST00000338045 USP17L5A8MUK1 530 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 GOLGA8HP0CJ92 632 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 ABCB5Q2M3G0 1257 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 SH3GLB2Q9NR46 395 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 MTMR7Q9Y216 660 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 CLIC4Q9Y696 253 aa17.84■□□□□ 0.45
LIMS1-202ENST00000338045 DICER1Q9UPY3 1922 aaKnown RBP17.84■□□□□ 0.45
LIMS1-202ENST00000338045 FSD2A1L4K1 749 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 EGFRP00533 1210 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 VEGFAP15692 232 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 MAP3K10Q02779 954 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 RRP1BQ14684 758 aaKnown RBP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 SHROOM1Q2M3G4 852 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 ANO1Q5XXA6 986 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 ARHGAP27Q6ZUM4 889 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 FAM177A1Q8N128 213 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 SYT17Q9BSW7 474 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 TMEM39BQ9GZU3 492 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 CNOT7Q9UIV1 285 aaKnown RBP17.83■□□□□ 0.44
LIMS1-202ENST00000338045 GJA3Q9Y6H8 435 aa17.83■□□□□ 0.44
LIMS1-202ENST00000338045 NR5A1Q13285 461 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 SEPT2Q15019 361 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 SIAH1Q8IUQ4 282 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 KCNG4Q8TDN1 519 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 OXER1Q8TDS5 423 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 RIOX1Q9H6W3 641 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 ISY1Q9ULR0 285 aaKnown RBP17.82■□□□□ 0.44
LIMS1-202ENST00000338045 MYH4Q9Y623 1939 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 GOLGA6L4A6NEF3 574 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 EEF2P13639 858 aaKnown RBP17.82■□□□□ 0.44
LIMS1-202ENST00000338045 DEKP35659 375 aaKnown RBP17.82■□□□□ 0.44
LIMS1-202ENST00000338045 KRT2P35908 639 aa17.82■□□□□ 0.44
LIMS1-202ENST00000338045 JAG1P78504 1218 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms