RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ICA1Q05084 483 aa21.28■■□□□ 1
HDDC3-201ENST00000330334 TRIB2Q92519 343 aa21.28■■□□□ 1
HDDC3-201ENST00000330334 HTATIP2Q9BUP3 242 aa21.28■■□□□ 1
HDDC3-201ENST00000330334 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.28■■□□□ 1
HDDC3-201ENST00000330334 SMIM22K7EJ46 135 aa21.27■■□□□ 1
HDDC3-201ENST00000330334 FARP2O94887 1054 aaPredicted RBP21.27■■□□□ 1
HDDC3-201ENST00000330334 HDAC1Q13547 482 aaPredicted RBP21.27■■□□□ 1
HDDC3-201ENST00000330334 VCPKMTQ9H867 229 aa21.27■■□□□ 1
HDDC3-201ENST00000330334 BTBD7Q9P203 1132 aa21.27■■□□□ 1
HDDC3-201ENST00000330334 CEP290O15078 2479 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 SLC15A5A6NIM6 579 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 MX1P20591 662 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 MB21D1Q8N884 522 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 ANKLE1Q8NAG6 615 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 CRBNQ96SW2 442 aa21.26■□□□□ 0.99
HDDC3-201ENST00000330334 PLXNB2O15031 1838 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 PATL2C9JE40 543 aaKnown RBP21.25■□□□□ 0.99
HDDC3-201ENST00000330334 GPAA1O43292 621 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 PTPREP23469 700 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 MAP2K5Q13163 448 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 KIAA1755Q5JYT7 1200 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 APBA2Q99767 749 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 BAZ2AQ9UIF9 1905 aaKnown RBP21.25■□□□□ 0.99
HDDC3-201ENST00000330334 SALL3Q9BXA9 1300 aa21.25■□□□□ 0.99
HDDC3-201ENST00000330334 WDR46O15213 610 aaKnown RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 HOXC6P09630 235 aa21.24■□□□□ 0.99
HDDC3-201ENST00000330334 EEF2P13639 858 aaKnown RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 ZKSCAN1P17029 563 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 TRIM32Q13049 653 aa21.24■□□□□ 0.99
HDDC3-201ENST00000330334 OTUD7AQ8TE49 926 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 DPF3Q92784 378 aa21.24■□□□□ 0.99
HDDC3-201ENST00000330334 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 TANGO6Q9C0B7 1094 aa21.24■□□□□ 0.99
HDDC3-201ENST00000330334 CWC22Q9HCG8 908 aaKnown RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 ZBTB47Q9UFB7 747 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-201ENST00000330334 ROBO3Q96MS0 1386 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 STRNO43815 780 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 PRKAR2AP13861 404 aaKnown RBP21.23■□□□□ 0.99
HDDC3-201ENST00000330334 DSG3P32926 999 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 GRB14Q14449 540 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 SHCBP1Q8NEM2 672 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 ZNF287Q9HBT7 754 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 STAP2Q9UGK3 403 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 IVNS1ABPQ9Y6Y0 642 aa21.23■□□□□ 0.99
HDDC3-201ENST00000330334 H0YGN5 161 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 M0R2C6 588 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 RASA1P20936 1047 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 ZMYM1Q5SVZ6 1142 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 ANKRD45Q5TZF3 282 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 TICAM2Q86XR7 235 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 CLEC10AQ8IUN9 316 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 MOV10L1Q9BXT6 1211 aaKnown RBP21.22■□□□□ 0.99
HDDC3-201ENST00000330334 SPATC1LQ9H0A9 340 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 MKNK2Q9HBH9 465 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 OGDHLQ9ULD0 1010 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 ADAMTS5Q9UNA0 930 aa21.22■□□□□ 0.99
HDDC3-201ENST00000330334 MINDY4BA8MYZ0 360 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 FLOT1O75955 427 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 CACNB2Q08289 660 aaPredicted RBP21.21■□□□□ 0.99
HDDC3-201ENST00000330334 HABP4Q5JVS0 413 aaKnown RBP21.21■□□□□ 0.99
HDDC3-201ENST00000330334 NECAB2Q7Z6G3 386 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 IFNL3Q8IZI9 196 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 SPICE1Q8N0Z3 855 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 FSD1Q9BTV5 496 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 NACAP1Q9BZK3 213 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 EPB41L4AQ9HCS5 686 aaPredicted RBP21.21■□□□□ 0.99
HDDC3-201ENST00000330334 GOPCQ9HD26 462 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 NR2E3Q9Y5X4 410 aa21.21■□□□□ 0.99
HDDC3-201ENST00000330334 IGHA2P01877 340 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 APPP05067 770 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 TDO2P48775 406 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 CCL14Q16627 93 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 WDR78Q5VTH9 848 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 MROH8Q9H579 483 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 NYAP2Q9P242 653 aa21.2■□□□□ 0.98
HDDC3-201ENST00000330334 MFSD14CQ5VZR4 134 aa21.19■□□□□ 0.98
HDDC3-201ENST00000330334 ABRAQ8N0Z2 381 aa21.19■□□□□ 0.98
HDDC3-201ENST00000330334 PAWRQ96IZ0 340 aaKnown RBP21.19■□□□□ 0.98
HDDC3-201ENST00000330334 SYNPO2Q9UMS6 1093 aa21.19■□□□□ 0.98
HDDC3-201ENST00000330334 MYH8P13535 1937 aa21.19■□□□□ 0.98
HDDC3-201ENST00000330334 RLFQ13129 1914 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 MNX1P50219 401 aaPredicted RBP21.18■□□□□ 0.98
HDDC3-201ENST00000330334 PDE1AP54750 535 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 ATP2B2Q01814 1243 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 ZNF444Q8N0Y2 327 aaPredicted RBP21.18■□□□□ 0.98
HDDC3-201ENST00000330334 MKL1Q969V6 931 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 EVI5LQ96CN4 794 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 ATG4CQ96DT6 458 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 SEC62Q99442 399 aaKnown RBP21.18■□□□□ 0.98
HDDC3-201ENST00000330334 NBPF3Q9H094 633 aa21.18■□□□□ 0.98
HDDC3-201ENST00000330334 IGKV6D-41A0A0C4DH26 115 aa21.17■□□□□ 0.98
HDDC3-201ENST00000330334 ERCC3P19447 782 aa21.17■□□□□ 0.98
HDDC3-201ENST00000330334 LHX8Q68G74 356 aa21.17■□□□□ 0.98
HDDC3-201ENST00000330334 YTHDC1Q96MU7 727 aaKnown RBP21.17■□□□□ 0.98
HDDC3-201ENST00000330334 SLC25A27O95847 323 aa21.16■□□□□ 0.98
HDDC3-201ENST00000330334 SLC3A2P08195 630 aaKnown RBP21.16■□□□□ 0.98
HDDC3-201ENST00000330334 OLFML2BQ68BL8 750 aa21.16■□□□□ 0.98
HDDC3-201ENST00000330334 NPLOC4Q8TAT6 608 aa21.16■□□□□ 0.98
HDDC3-201ENST00000330334 RWDD1Q9H446 243 aaPredicted RBP21.16■□□□□ 0.98
HDDC3-201ENST00000330334 SLC5A4Q9NY91 659 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms