RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HEXIM2Q96MH2 286 aaKnown RBP5.15□□□□□ -1.59
HMGB1-201ENST00000326004 LNPKQ9C0E8 428 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 OSBPL2Q9H1P3 480 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 KCNH3Q9ULD8 1083 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 LEMD3Q9Y2U8 911 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 DDAH1O94760 285 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 GNPTABQ3T906 1256 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 ANKRD39Q53RE8 183 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 ARHGAP27Q6ZUM4 889 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 LRP10Q7Z4F1 713 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 FAM178BQ8IXR5 827 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 SHISA5Q8N114 240 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 MFSD4AQ8N468 514 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 PIWIL2Q8TC59 973 aaKnown RBP5.14□□□□□ -1.59
HMGB1-201ENST00000326004 MKRN2Q9H000 416 aaKnown RBP5.14□□□□□ -1.59
HMGB1-201ENST00000326004 PIM2Q9P1W9 311 aa5.14□□□□□ -1.59
HMGB1-201ENST00000326004 CYP26A1O43174 497 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 FURINP09958 794 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 NAT2P11245 290 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 ZNF143P52747 638 aaPredicted RBP5.13□□□□□ -1.59
HMGB1-201ENST00000326004 NFE2L2Q16236 605 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 TDRD10Q5VZ19 366 aaKnown RBP5.13□□□□□ -1.59
HMGB1-201ENST00000326004 KIAA1211LQ6NV74 962 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 C6orf15Q6UXA7 325 aaPredicted RBP5.13□□□□□ -1.59
HMGB1-201ENST00000326004 DPH6Q7L8W6 267 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 PPFIBP1Q86W92 1011 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 CCDC144CPQ8IYA2 1237 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 CELF2-AS1Q8N7Q2 184 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 KLHL6Q8WZ60 621 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 CCDC113Q9H0I3 377 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 PRR13Q9NZ81 148 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 MSRB2Q9Y3D2 182 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 CAPN6Q9Y6Q1 641 aa5.13□□□□□ -1.59
HMGB1-201ENST00000326004 PRR19A6NJB7 356 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 C9IYK1 514 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 GJB6O95452 261 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 CBX7O95931 251 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 CEACAM5P06731 702 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 FOSL1P15407 271 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 OXCT1P55809 520 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 NBPF9Q3BBW0 867 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 PRSS36Q5K4E3 855 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 C7orf61Q8IZ16 206 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 DTWD2Q8NBA8 298 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 ZNF512BQ96KM6 892 aaPredicted RBP5.12□□□□□ -1.59
HMGB1-201ENST00000326004 Q96M66 194 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 EPN3Q9H201 632 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 SEMA6BQ9H3T3 888 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 ST7Q9NRC1 585 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 PCDHB10Q9UN67 800 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 PCDHB12Q9Y5F1 795 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 CNTNAP4Q9C0A0 1308 aa5.12□□□□□ -1.59
HMGB1-201ENST00000326004 FAM155AB1AL88 458 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 K7ELQ4 463 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 TP53P04637 393 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 GRIK1P39086 918 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 CLCN7P51798 805 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 TNK2Q07912 1038 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 AUHQ13825 339 aaKnown RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 RASGRF1Q13972 1273 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 TCEAL1Q15170 157 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 CCDC144BQ3MJ40 725 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 AXDND1Q5T1B0 1012 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 HEATR6Q6AI08 1181 aaKnown RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 INTS5Q6P9B9 1019 aaKnown RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 EEPD1Q7L9B9 569 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 ST13P5Q8NFI4 369 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 ENOX1Q8TC92 643 aaKnown RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 NETO1Q8TDF5 533 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 MICAL1Q8TDZ2 1067 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 HAUS7Q99871 368 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 ASCC2Q9H1I8 757 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-201ENST00000326004 ZSWIM4Q9H7M6 989 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 LRRC4CQ9HCJ2 640 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 SNX11Q9Y5W9 270 aa5.11□□□□□ -1.59
HMGB1-201ENST00000326004 TMEM265A0A087WTH1 108 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 ANKRD34BA5PLL1 514 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 PRR33A8MZF0 331 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 B2RBV5 119 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 PDPK1O15530 556 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 SUSD5O60279 629 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 ITGA4P13612 1032 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 CD247P20963 164 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 RASA3Q14644 834 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 IFI16Q16666 785 aaKnown RBP5.1□□□□□ -1.59
HMGB1-201ENST00000326004 NKPD1Q17RQ9 610 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 DCAF15Q66K64 600 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 FAM181AQ8N9Y4 354 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 ZNF669Q96BR6 464 aaPredicted RBP5.1□□□□□ -1.59
HMGB1-201ENST00000326004 DEPDC7Q96QD5 511 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 SRPK1Q96SB4 655 aaKnown RBP5.1□□□□□ -1.59
HMGB1-201ENST00000326004 GPR62Q9BZJ7 368 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 KLHL25Q9H0H3 589 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 GBP3Q9H0R5 595 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 TRIT1Q9H3H1 467 aaKnown RBP5.1□□□□□ -1.59
HMGB1-201ENST00000326004 SNTG2Q9NY99 539 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 WHRNQ9P202 907 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 FBXL21Q9UKT6 434 aa5.1□□□□□ -1.59
HMGB1-201ENST00000326004 CDK11AQ9UQ88 783 aaPredicted RBP5.1□□□□□ -1.59
HMGB1-201ENST00000326004 A0A087WZG4 1122 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms