RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 CALM3P0DP25 149 aa17.12■□□□□ 0.33
VARS2-201ENST00000321897 NF2P35240 595 aa17.12■□□□□ 0.33
VARS2-201ENST00000321897 TBC1D8BQ0IIM8 1120 aa17.12■□□□□ 0.33
VARS2-201ENST00000321897 ZSCAN10Q96SZ4 725 aaPredicted RBP17.12■□□□□ 0.33
VARS2-201ENST00000321897 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.332e-6■■■■■ 46.8
VARS2-201ENST00000321897 BIN2Q9UBW5 565 aaPredicted RBP17.12■□□□□ 0.33
VARS2-201ENST00000321897 PRDX5P30044 214 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 INPP5BP32019 993 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 LUC7L2Q9Y383 392 aaKnown RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 CEMIPQ8WUJ3 1361 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 CIAO1O76071 339 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 ERLIN2O94905 339 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 ARID4AP29374 1257 aaPredicted RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 CCT5P48643 541 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 CCDC122Q5T0U0 273 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 GBP2P32456 591 aaPredicted RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 SCNN1DP51172 638 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 CCDC91Q7Z6B0 441 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 FAM204AQ9H8W3 233 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 LMTK3Q96Q04 1460 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 GOLGA6CA6NDK9 693 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 GOLGA6DP0CG33 693 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 HPDP32754 393 aaPredicted RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 USP49Q70CQ1 688 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 LRRC47Q8N1G4 583 aaKnown RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 NAPGQ99747 312 aaPredicted RBP17.11■□□□□ 0.33
VARS2-201ENST00000321897 GOLGA6AQ9NYA3 693 aa17.11■□□□□ 0.33
VARS2-201ENST00000321897 PSDA5PKW4 1024 aaPredicted RBP17.1■□□□□ 0.33
VARS2-201ENST00000321897 MCM3P25205 808 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 FCHSD1Q86WN1 690 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 SLC44A5Q8NCS7 719 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 TMEM131LA2VDJ0 1609 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 HSF2BPO75031 334 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 SPECC1LQ69YQ0 1117 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 NELFCDQ8IXH7 590 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 ANKRD13CQ8N6S4 541 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 PNMA1Q8ND90 353 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 CSGALNACT2Q8N6G5 542 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 FAM207AQ9NSI2 230 aaPredicted RBP17.1■□□□□ 0.33
VARS2-201ENST00000321897 POLR3EQ9NVU0 708 aa17.1■□□□□ 0.33
VARS2-201ENST00000321897 CCDC42Q96M95 316 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 GPR108Q9NPR9 543 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 PREX1Q8TCU6 1659 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 USP17L3A6NCW0 530 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 USP17L4A6NCW7 530 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 ENC1O14682 589 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 FDPSP14324 419 aaKnown RBP17.09■□□□□ 0.33
VARS2-201ENST00000321897 ATP1A2P50993 1020 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 GTF2IP78347 998 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 TRAPPC3LQ5T215 181 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 USP17L1Q7RTZ2 530 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 RAB34Q9BZG1 259 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 PXDNQ92626 1479 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 CALML3P27482 149 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 RABL6Q3YEC7 729 aaPredicted RBP17.09■□□□□ 0.33
VARS2-201ENST00000321897 SND1Q7KZF4 910 aaKnown RBP eCLIP17.09■□□□□ 0.33
VARS2-201ENST00000321897 MLKLQ8NB16 471 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 NELFBQ8WX92 580 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 CELF1Q92879 486 aaKnown RBP17.09■□□□□ 0.33
VARS2-201ENST00000321897 SAMM50Q9Y512 469 aa17.09■□□□□ 0.33
VARS2-201ENST00000321897 MAP2K2P36507 400 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 TECP42680 631 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 RBM6P78332 1123 aaKnown RBP17.08■□□□□ 0.33
VARS2-201ENST00000321897 MRPS25P82663 173 aaKnown RBP17.08■□□□□ 0.33
VARS2-201ENST00000321897 DPF2Q92785 391 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 IRX2Q9BZI1 471 aaPredicted RBP17.08■□□□□ 0.33
VARS2-201ENST00000321897 GOPCQ9HD26 462 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 ZBTB21Q9ULJ3 1066 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 DEPDC5O75140 1603 aa17.08■□□□□ 0.33
VARS2-201ENST00000321897 SHPRHQ149N8 1683 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 IFFO1Q0D2I5 559 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 ZNF804AQ7Z570 1209 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 MB21D2Q8IYB1 491 aaPredicted RBP17.08■□□□□ 0.32
VARS2-201ENST00000321897 CCDC114Q96M63 670 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 USO1O60763 962 aaKnown RBP17.08■□□□□ 0.32
VARS2-201ENST00000321897 MSL1Q68DK7 614 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 FMR1NBQ8N0W7 255 aaPredicted RBP17.08■□□□□ 0.32
VARS2-201ENST00000321897 BCAS4Q8TDM0 211 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 TAF4BQ92750 862 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 RRP36Q96EU6 259 aaKnown RBP17.08■□□□□ 0.32
VARS2-201ENST00000321897 TSG101Q99816 390 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 NLRC4Q9NPP4 1024 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 DLC1Q96QB1 1528 aa17.08■□□□□ 0.32
VARS2-201ENST00000321897 PARP1P09874 1014 aaKnown RBP17.07■□□□□ 0.32
VARS2-201ENST00000321897 CALRP27797 417 aaKnown RBP17.07■□□□□ 0.32
VARS2-201ENST00000321897 MAEAQ7L5Y9 396 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 FNBP4Q8N3X1 1017 aaPredicted RBP17.07■□□□□ 0.32
VARS2-201ENST00000321897 SPAG5Q96R06 1193 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 C6orf50Q9HD87 102 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 FEZ2Q9UHY8 353 aaPredicted RBP17.07■□□□□ 0.32
VARS2-201ENST00000321897 PRR29P0C7W0 189 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 SSR1P43307 286 aaKnown RBP17.07■□□□□ 0.32
VARS2-201ENST00000321897 PAK1Q13153 545 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 DOK7Q18PE1 504 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 MICALCLQ6ZW33 695 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 CTAGE1Q96RT6 745 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 POLD4Q9HCU8 107 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 CAPN7Q9Y6W3 813 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 CHMP2AO43633 222 aa17.07■□□□□ 0.32
VARS2-201ENST00000321897 ECM2O94769 699 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms