RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SCYL3Q8IZE3 742 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 ZBTB40Q9NUA8 1239 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TXLNGQ9NUQ3 528 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 DISP3Q9P2K9 1392 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 CHMP2AO43633 222 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 KRT81Q14533 505 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TEKT1Q969V4 418 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 WDR70Q9NW82 654 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 POLKQ9UBT6 870 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 VPS41P49754 854 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 SP4Q02446 784 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 SCYL1Q96KG9 808 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 PASKQ96RG2 1323 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 RSBN1LQ6PCB5 846 aaPredicted RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 LCA5Q86VQ0 697 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 MYCT1Q8N699 235 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 TUBB6Q9BUF5 446 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 INTS9Q9NV88 658 aaKnown RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 PFDN6O15212 129 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 LZTS2Q9BRK4 669 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 LMBRD1Q9NUN5 540 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 TOP2BQ02880 1626 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 TXKP42681 527 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 TRIM42Q8IWZ5 723 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 PPWD1Q96BP3 646 aaKnown RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 KCNJ18B7U540 433 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 XRCC5P13010 732 aaKnown RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 KCNJ12Q14500 433 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 RIOK1Q9BRS2 568 aaKnown RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 MAP3K7O43318 606 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 ATF2P15336 505 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 ZKSCAN8Q15776 578 aaPredicted RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 BSPRYQ5W0U4 402 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 NUB1Q9Y5A7 615 aa15.23■□□□□ 0.03
CSPG4-201ENST00000308508 LSM14BQ9BX40 385 aaKnown RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 ZNF215Q9UL58 517 aaPredicted RBP15.23■□□□□ 0.03
CSPG4-201ENST00000308508 IFNB1P01574 187 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 DEUP1Q05D60 604 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 KRT25Q7Z3Z0 450 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 SNX29Q8TEQ0 813 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 N4BP2L2Q92802 583 aaPredicted RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 ZNF277Q9NRM2 450 aaPredicted RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 PSDA5PKW4 1024 aaPredicted RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 KCNG1Q9UIX4 513 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 ANKRD2Q9GZV1 360 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 PPME1Q9Y570 386 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 MSH6P52701 1360 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 ASPHQ12797 758 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 CCDC138Q96M89 665 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 NACA2Q9H009 215 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 HAUS4Q9H6D7 363 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 A0A087WUV0 522 aaPredicted RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 TTC6Q86TZ1 520 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 KDM3AQ9Y4C1 1321 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 DNM2P50570 870 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 ETF1P62495 437 aaKnown RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 ANGPTL2Q9UKU9 493 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 SEC24BO95487 1268 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 HSPA8P11142 646 aaKnown RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 RBM26Q5T8P6 1007 aaKnown RBP15.22■□□□□ 0.03
CSPG4-201ENST00000308508 PLEKHA4Q9H4M7 779 aa15.22■□□□□ 0.03
CSPG4-201ENST00000308508 B4E1Z4 1266 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 EEF1DP29692 281 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 CCDC68Q9H2F9 335 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 GADD45BO75293 160 aaPredicted RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 SYF2O95926 243 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 DIS3L2Q8IYB7 885 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 CDKL2Q92772 493 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 NT5C3AQ9H0P0 336 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 ACTR5Q9H9F9 607 aaPredicted RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 LMNB2Q03252 620 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 CERS3Q8IU89 383 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 C8orf58Q8NAV2 365 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 U2AF1L4Q8WU68 220 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 LRWD1Q9UFC0 647 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 TCP11Q8WWU5 503 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 KIAA1468Q9P260 1216 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 HADHQ16836 314 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 MRFAP1L1Q96HT8 127 aa15.21■□□□□ 0.03
CSPG4-201ENST00000308508 SCHIP1Q9P0W5 487 aaPredicted RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 IPO11Q9UI26 975 aaKnown RBP15.21■□□□□ 0.03
CSPG4-201ENST00000308508 JPH2Q9BR39 696 aaPredicted RBP15.21■□□□□ 0.02
CSPG4-201ENST00000308508 MBD4O95243 580 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 MORC3Q14149 939 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 NCAPH2Q6IBW4 605 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 CNOT10Q9H9A5 744 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 TRPC6Q9Y210 931 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 CDK13Q14004 1512 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 EIF3CLB5ME19 914 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 PNOCQ13519 176 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 IWS1Q96ST2 819 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 EIF3CQ99613 913 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 PKD2L1Q9P0L9 805 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 STAM2O75886 525 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 CDR2Q01850 454 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 CDC37L1Q7L3B6 337 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 TRIM50Q86XT4 487 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 TBC1D7Q9P0N9 293 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 SNX14Q9Y5W7 946 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 GOLGA8CPA6NN73 597 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms