RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CDHR2Q9BYE9 1310 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 CDC25BP30305 580 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 TMEM266Q2M3C6 531 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 C8orf74Q6P047 294 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 ST7Q9NRC1 585 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 ANGEL1Q9UNK9 670 aaKnown RBP17.21■□□□□ 0.35
SHH-201ENST00000297261 CAPN7Q9Y6W3 813 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 PPP1R12BO60237 982 aaPredicted RBP17.21■□□□□ 0.35
SHH-201ENST00000297261 RBM17Q96I25 401 aaKnown RBP17.21■□□□□ 0.35
SHH-201ENST00000297261 PARD6BQ9BYG5 372 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 IL25Q9H293 177 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 DLG5Q8TDM6 1919 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 USP42Q9H9J4 1324 aaKnown RBP17.21■□□□□ 0.35
SHH-201ENST00000297261 MYO1CO00159 1063 aa17.21■□□□□ 0.34
SHH-201ENST00000297261 TRIM37O94972 964 aa17.21■□□□□ 0.34
SHH-201ENST00000297261 RFX5P48382 616 aaPredicted RBP17.21■□□□□ 0.34
SHH-201ENST00000297261 SMIM5Q71RC9 77 aa17.21■□□□□ 0.34
SHH-201ENST00000297261 ZC3H12CQ9C0D7 883 aaKnown RBP17.21■□□□□ 0.34
SHH-201ENST00000297261 KAT14Q9H8E8 782 aa17.21■□□□□ 0.34
SHH-201ENST00000297261 A0A1B0GUA9 196 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 PRDM1O75626 825 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 ANKS4BQ8N8V4 417 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 CLIC4Q9Y696 253 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 COL15A1P39059 1388 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 CCT5P48643 541 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 SCRN1Q12765 414 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 CRACR2BQ8N4Y2 399 aaPredicted RBP17.2■□□□□ 0.34
SHH-201ENST00000297261 JAKMIP2Q96AA8 810 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 MYCBPQ99417 103 aaPredicted RBP17.2■□□□□ 0.34
SHH-201ENST00000297261 PUS7LQ9H0K6 701 aaKnown RBP17.2■□□□□ 0.34
SHH-201ENST00000297261 FAM204AQ9H8W3 233 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 AATFQ9NY61 560 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHH-201ENST00000297261 PARP3Q9Y6F1 533 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 WWC3Q9ULE0 1092 aa17.2■□□□□ 0.34
SHH-201ENST00000297261 KCNF1Q9H3M0 494 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 SERTAD1Q9UHV2 236 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 AFF2P51816 1311 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 MCAMP43121 646 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 GNGT1P63211 74 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 RGS22Q8NE09 1264 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 CLIC6Q96NY7 704 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 TAOK3Q9H2K8 898 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 PCDHA5Q9Y5H7 936 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 JCADQ9P266 1359 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 SLIT3O75094 1523 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 KIF5BP33176 963 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 RBM6P78332 1123 aaKnown RBP17.19■□□□□ 0.34
SHH-201ENST00000297261 UBE3CQ15386 1083 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 KCNJ14Q9UNX9 436 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 SPATA31A5Q5VU36 1347 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 SPATA31A7Q8IWB4 1347 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 APBA3O96018 575 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 CLNS1AP54105 237 aaKnown RBP17.19■□□□□ 0.34
SHH-201ENST00000297261 PPFIA1Q13136 1202 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 CABS1Q96KC9 395 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 SAR1BQ9Y6B6 198 aa17.19■□□□□ 0.34
SHH-201ENST00000297261 ATP1A3P13637 1013 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 ATP1A2P50993 1020 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 CLEC4GQ6UXB4 293 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 CCDC155Q8N6L0 562 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 TMEM87BQ96K49 555 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 JRKLQ9Y4A0 524 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 MORC2Q9Y6X9 1032 aaPredicted RBP17.18■□□□□ 0.34
SHH-201ENST00000297261 ERCC3P19447 782 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 UBLCP1Q8WVY7 318 aaPredicted RBP17.18■□□□□ 0.34
SHH-201ENST00000297261 SELENOOQ9BVL4 669 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 EPC1Q9H2F5 836 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 LTN1O94822 1766 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 PFKFB2O60825 505 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 CHGBP05060 677 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 ADD1P35611 737 aaKnown RBP17.18■□□□□ 0.34
SHH-201ENST00000297261 TTC19Q6DKK2 380 aaPredicted RBP17.18■□□□□ 0.34
SHH-201ENST00000297261 SRGAP1Q7Z6B7 1085 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 GGA1Q9UJY5 639 aa17.18■□□□□ 0.34
SHH-201ENST00000297261 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 ATP8B1O43520 1251 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 TSPY3P0CV98 308 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 TSPY8P0CW00 308 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 CMA1P23946 247 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 PNMA8AQ86V59 439 aaPredicted RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 IFNL3Q8IZI9 196 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 ZNF710Q8N1W2 664 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 CDC23Q9UJX2 597 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 ADAM21Q9UKJ8 722 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 STX10O60499 249 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 ADD2P35612 726 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 IRX5P78411 483 aaPredicted RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 PICALMQ13492 652 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 RSRC1Q96IZ7 334 aaKnown RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 PAIP2Q9BPZ3 127 aaKnown RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 PIH1D3Q9NQM4 214 aaKnown RBP17.17■□□□□ 0.34
SHH-201ENST00000297261 RCOR1Q9UKL0 485 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 RPS6KA4O75676 772 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 ZNF76P36508 570 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 RAD51AP2Q09MP3 1159 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 FBF1Q8TES7 1133 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 SDR42E1Q8WUS8 393 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 SALL3Q9BXA9 1300 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 CAMTA1Q9Y6Y1 1673 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 CCDC151A5D8V7 595 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms