RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RPS12P25398 132 aaKnown RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 SYT17Q9BSW7 474 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 ZNF70Q9UC06 446 aaPredicted RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 ISY1Q9ULR0 285 aaKnown RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 ZNF541Q9H0D2 1346 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 PALM3A6NDB9 673 aaPredicted RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 FZD9O00144 591 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 MYO1BO43795 1136 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 CEBPZQ03701 1054 aaKnown RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 FKBP1CQ5VVH2 108 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 STAG2Q8N3U4 1231 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 FOXP1Q9H334 677 aaPredicted RBP20.96■□□□□ 0.95
VIM-201ENST00000224237 POLR3EQ9NVU0 708 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 RTEL1Q9NZ71 1219 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 GJA3Q9Y6H8 435 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 MPHOSPH10O00566 681 aaKnown RBP20.95■□□□□ 0.94
VIM-201ENST00000224237 EGFRP00533 1210 aa20.95■□□□□ 0.94
VIM-201ENST00000224237 TATDN1Q6P1N9 297 aa20.95■□□□□ 0.94
VIM-201ENST00000224237 DIS3L2Q8IYB7 885 aaKnown RBP20.95■□□□□ 0.94
VIM-201ENST00000224237 FTOQ9C0B1 505 aaKnown RBP eCLIP20.95■□□□□ 0.94
VIM-201ENST00000224237 KCNJ14Q9UNX9 436 aa20.95■□□□□ 0.94
VIM-201ENST00000224237 PARP1P09874 1014 aaKnown RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 GMPSP49915 693 aaPredicted RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 ZNF445P59923 1031 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 NBPF9Q3BBW0 867 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 CERKLQ49MI3 558 aaPredicted RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 CLEC10AQ8IUN9 316 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 FAM151AQ8WW52 585 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 CSRNP1Q96S65 589 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 VPS54Q9P1Q0 977 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 YEATS4O95619 227 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 SCG2P13521 617 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 EIF6P56537 245 aaKnown RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 PFKFB3Q16875 520 aaPredicted RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 RASGRP2Q7LDG7 609 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 NOSTRINQ8IVI9 506 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 ZBED3Q96IU2 234 aaPredicted RBP20.94■□□□□ 0.94
VIM-201ENST00000224237 VEZTQ9HBM0 779 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 MYOZ2Q9NPC6 264 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 MTMR7Q9Y216 660 aa20.94■□□□□ 0.94
VIM-201ENST00000224237 hCG_1642624A0A1W2PR95 340 aa20.93■□□□□ 0.94
VIM-201ENST00000224237 WNT10BO00744 389 aa20.93■□□□□ 0.94
VIM-201ENST00000224237 NASPP49321 788 aaPredicted RBP20.93■□□□□ 0.94
VIM-201ENST00000224237 SHROOM1Q2M3G4 852 aaPredicted RBP20.93■□□□□ 0.94
VIM-201ENST00000224237 TPRNQ4KMQ1 711 aa20.93■□□□□ 0.94
VIM-201ENST00000224237 PHF20Q9BVI0 1012 aa20.93■□□□□ 0.94
VIM-201ENST00000224237 HERC5Q9UII4 1024 aaKnown RBP20.93■□□□□ 0.94
VIM-201ENST00000224237 GOLGA6L3A6NEY3 463 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 BTBD18B2RXH4 712 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 CCDC183Q5T5S1 534 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 RBM26Q5T8P6 1007 aaKnown RBP20.92■□□□□ 0.94
VIM-201ENST00000224237 KCNG4Q8TDN1 519 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 PGBD1Q96JS3 809 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 SPZ1Q9BXG8 430 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 CLIP2Q9UDT6 1046 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 CNTNAP1P78357 1384 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 FSD2A1L4K1 749 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 KLRF2D3W0D1 207 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 PDHBP11177 359 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 SMARCA1P28370 1054 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 ZNF280AP59817 542 aaPredicted RBP20.92■□□□□ 0.94
VIM-201ENST00000224237 FAM83AQ86UY5 434 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 LINC00301Q8NCQ3 95 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 BRMS1Q9HCU9 246 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 SCAF8Q9UPN6 1271 aaKnown RBP20.92■□□□□ 0.94
VIM-201ENST00000224237 MYH4Q9Y623 1939 aa20.92■□□□□ 0.94
VIM-201ENST00000224237 YBX3P16989 372 aaKnown RBP eCLIP20.91■□□□□ 0.943e-8■■□□□ 11.9
VIM-201ENST00000224237 KRT2P35908 639 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 STK38Q15208 465 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 ASPRV1Q53RT3 343 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 ANO1Q5XXA6 986 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 TMEM179Q6ZVK1 233 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 CDAN1Q8IWY9 1227 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 MICALL2Q8IY33 904 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 LRRC47Q8N1G4 583 aaKnown RBP20.91■□□□□ 0.94
VIM-201ENST00000224237 SHISA4Q96DD7 197 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 KANSL2Q9H9L4 492 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 CLIC4Q9Y696 253 aa20.91■□□□□ 0.94
VIM-201ENST00000224237 CYTH3O43739 400 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 SNHG28P0DPA3 235 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 USP17L2Q6R6M4 530 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 BICD2Q8TD16 824 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 DPF2Q92785 391 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 SBF1O95248 1867 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 BAZ2BQ9UIF8 2168 aaKnown RBP20.9■□□□□ 0.94
VIM-201ENST00000224237 GOLGA8HP0CJ92 632 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 SAMD7Q7Z3H4 446 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 SH3GLB2Q9NR46 395 aa20.9■□□□□ 0.94
VIM-201ENST00000224237 USP17L5A8MUK1 530 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 LMNB1P20700 586 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 ME1P48163 572 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 SF3A1Q15459 793 aaKnown RBP20.89■□□□□ 0.93
VIM-201ENST00000224237 ABCB5Q2M3G0 1257 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 RILPL1Q5EBL4 403 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 PIBF1Q8WXW3 757 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 TMEM39BQ9GZU3 492 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.89■□□□□ 0.93
VIM-201ENST00000224237 NYAP2Q9P242 653 aa20.89■□□□□ 0.93
VIM-201ENST00000224237 DICER1Q9UPY3 1922 aaKnown RBP20.89■□□□□ 0.93
VIM-201ENST00000224237 ASTN2O75129 1339 aaPredicted RBP20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms