RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 RIMBP3CA6NJZ7 1639 aa12.83□□□□□ -0.35
NOD1-201ENST00000222823 RIMBP3BA6NNM3 1639 aa12.83□□□□□ -0.35
NOD1-201ENST00000222823 RIMBP3Q9UFD9 1639 aa12.83□□□□□ -0.35
NOD1-201ENST00000222823 VIRMAQ69YN4 1812 aaKnown RBP12.83□□□□□ -0.36
NOD1-201ENST00000222823 CFBP00751 764 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 CYP21A2P08686 494 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 MAGEA1P43355 309 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 SLC9C1Q4G0N8 1177 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 TIGD1Q96MW7 591 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 VPS18Q9P253 973 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 SERTAD1Q9UHV2 236 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 USP21Q9UK80 565 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 ZEB2O60315 1214 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 DNAJC21Q5F1R6 531 aaKnown RBP12.83□□□□□ -0.36
NOD1-201ENST00000222823 NSMFQ6X4W1 530 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 CEP170BQ9Y4F5 1589 aaPredicted RBP12.83□□□□□ -0.36
NOD1-201ENST00000222823 TNKSO95271 1327 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 SPOPO43791 374 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
NOD1-201ENST00000222823 ERCC3P19447 782 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 RAD51AP2Q09MP3 1159 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 PPP1R7Q15435 360 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 C6orf163Q5TEZ5 329 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 CMTR1Q8N1G2 835 aaKnown RBP12.83□□□□□ -0.36
NOD1-201ENST00000222823 CARD6Q9BX69 1037 aa12.83□□□□□ -0.36
NOD1-201ENST00000222823 SMCO2A6NFE2 343 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 DKC1O60832 514 aaKnown RBP eCLIP12.82□□□□□ -0.36
NOD1-201ENST00000222823 PFKFB1P16118 471 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 USH1GQ495M9 461 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 UIMC1Q96RL1 719 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 SMIM23A6NLE4 172 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 EBAG9O00559 213 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 NR1I2O75469 434 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 KRT5P13647 590 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 ZNF354CQ86Y25 554 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 IFT74Q96LB3 600 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 PSMD1Q99460 953 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 XPO4Q9C0E2 1151 aaKnown RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 GREM2Q9H772 168 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 MAP3K15Q6ZN16 1313 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 RIOK3O14730 519 aaKnown RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 MYCLP12524 364 aaPredicted RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 U2AF2P26368 475 aaKnown RBP eCLIP12.82□□□□□ -0.36
NOD1-201ENST00000222823 ALDH1B1P30837 517 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 ZMYM1Q5SVZ6 1142 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 HDXQ7Z353 690 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 TICAM2Q86XR7 235 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 PNMA1Q8ND90 353 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 CCDC26Q8TAB7 109 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 LRRC45Q96CN5 670 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 USP40Q9NVE5 1235 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 TMOD4Q9NZQ9 345 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 BTBD18B2RXH4 712 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 CALUO43852 315 aaPredicted RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 STX10O60499 249 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 CIAO1O76071 339 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 PHKA1P46020 1223 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 TUBB2AQ13885 445 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 UBE3CQ15386 1083 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 SREK1Q8WXA9 508 aaKnown RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 KIFAP3Q92845 792 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 ZSCAN10Q96SZ4 725 aaPredicted RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 TUBB2BQ9BVA1 445 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 PUS3Q9BZE2 481 aaKnown RBP12.82□□□□□ -0.36
NOD1-201ENST00000222823 BLZF1Q9H2G9 400 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 ASAP1Q9ULH1 1129 aa12.82□□□□□ -0.36
NOD1-201ENST00000222823 SALL3Q9BXA9 1300 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 LOC102724428A0A0B4J2F2 783 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SIK1P57059 783 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 PNOCQ13519 176 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 DLGAP5Q15398 846 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SEL1L2Q5TEA6 688 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 MAEAQ7L5Y9 396 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 NELFCDQ8IXH7 590 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.81□□□□□ -0.36
NOD1-201ENST00000222823 NELFBQ8WX92 580 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 TEKT1Q969V4 418 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 JAKMIP2Q96AA8 810 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SELENOSQ9BQE4 189 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 TBC1D7Q9P0N9 293 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SCRN1Q12765 414 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 FBXO18Q8NFZ0 1043 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 NAP1L3Q99457 506 aaPredicted RBP12.81□□□□□ -0.36
NOD1-201ENST00000222823 AXIN2Q9Y2T1 843 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.81□□□□□ -0.36
NOD1-201ENST00000222823 EXOC3O60645 756 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 CPLX4Q7Z7G2 160 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 SUPT20HQ8NEM7 779 aa12.81□□□□□ -0.36
NOD1-201ENST00000222823 CCDC94Q9BW85 323 aaPredicted RBP12.81□□□□□ -0.36
NOD1-201ENST00000222823 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.81□□□□□ -0.36
NOD1-201ENST00000222823 FERP16591 822 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 MNAT1P51948 309 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 RNASE9P60153 205 aaKnown RBP12.8□□□□□ -0.36
NOD1-201ENST00000222823 ZBTB16Q05516 673 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 CHRNDQ07001 517 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 ATG3Q9NT62 314 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 DDX39AO00148 427 aaKnown RBP12.8□□□□□ -0.36
NOD1-201ENST00000222823 CMA1P23946 247 aa12.8□□□□□ -0.36
NOD1-201ENST00000222823 PDE6BP35913 854 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms