RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 PARP10Q53GL7 1025 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 TMTC2Q8N394 836 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 TC2NQ8N9U0 490 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 ST7Q9NRC1 585 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 NRDCO43847 1150 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 CCDC24Q8N4L8 307 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 JAG2Q9Y219 1238 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 PPP2R2CQ9Y2T4 447 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 PHLPP1O60346 1717 aa17■□□□□ 0.31
CLN3-253ENST00000636977 ZNF804BA4D1E1 1349 aa17■□□□□ 0.31
CLN3-253ENST00000636977 TEX33O43247 280 aa17■□□□□ 0.31
CLN3-253ENST00000636977 DDB1Q16531 1140 aa17■□□□□ 0.31
CLN3-253ENST00000636977 DESI2Q9BSY9 194 aa17■□□□□ 0.31
CLN3-253ENST00000636977 PHF20Q9BVI0 1012 aa17■□□□□ 0.31
CLN3-253ENST00000636977 EPC1Q9H2F5 836 aa17■□□□□ 0.31
CLN3-253ENST00000636977 MORC2Q9Y6X9 1032 aaPredicted RBP17■□□□□ 0.31
CLN3-253ENST00000636977 MYH6P13533 1939 aa17■□□□□ 0.31
CLN3-253ENST00000636977 MTF1Q14872 753 aa17■□□□□ 0.31
CLN3-253ENST00000636977 IFIT1BQ5T764 474 aaKnown RBP17■□□□□ 0.31
CLN3-253ENST00000636977 ENOX1Q8TC92 643 aaKnown RBP17■□□□□ 0.31
CLN3-253ENST00000636977 SYMPKQ92797 1274 aaKnown RBP17■□□□□ 0.31
CLN3-253ENST00000636977 WDR24Q96S15 920 aa17■□□□□ 0.31
CLN3-253ENST00000636977 RNF26Q9BY78 433 aaPredicted RBP17■□□□□ 0.31
CLN3-253ENST00000636977 PLCH1Q4KWH8 1693 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 TRIM75PA6NK02 468 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 USP17L12C9JPN9 530 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 USP17L21D6R901 530 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 URI1O94763 535 aaPredicted RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 AKAP17AQ02040 695 aaKnown RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 NPY5RQ15761 445 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 FAM47AQ5JRC9 791 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 ZNF579Q8NAF0 562 aaKnown RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 MLKLQ8NB16 471 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 CELF1Q92879 486 aaKnown RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 BAG1Q99933 345 aaPredicted RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 HOOK1Q9UJC3 728 aaKnown RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 ANAPC4Q9UJX5 808 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 CTR9Q6PD62 1173 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 SLC51AQ86UW1 340 aa16.99■□□□□ 0.31
CLN3-253ENST00000636977 FAM84BQ96KN1 310 aaPredicted RBP16.99■□□□□ 0.31
CLN3-253ENST00000636977 A0A0U1RQJ8 604 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 CYP2D6P10635 497 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 TROAPQ12815 778 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 TAF3Q5VWG9 929 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 ELOA2Q8IYF1 753 aaPredicted RBP16.98■□□□□ 0.31
CLN3-253ENST00000636977 SPATA20Q8TB22 786 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 ATRIPQ8WXE1 791 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 MINPP1Q9UNW1 487 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 CACNA1SQ13698 1873 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 KRT2P35908 639 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 SPECC1LQ69YQ0 1117 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 ANKRD18AQ8IVF6 992 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 COL14A1Q05707 1796 aaKnown RBP16.98■□□□□ 0.31
CLN3-253ENST00000636977 ARHGAP29Q52LW3 1261 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 SRBD1Q8N5C6 995 aaKnown RBP16.98■□□□□ 0.31
CLN3-253ENST00000636977 PAGE5Q96GU1 130 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 PARP3Q9Y6F1 533 aa16.98■□□□□ 0.31
CLN3-253ENST00000636977 COL16A1Q07092 1604 aaPredicted RBP16.97■□□□□ 0.31
CLN3-253ENST00000636977 PLCD1P51178 756 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 DPYDQ12882 1025 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 CPLX3Q8WVH0 158 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 CDC5LQ99459 802 aaKnown RBP16.97■□□□□ 0.31
CLN3-253ENST00000636977 CARD6Q9BX69 1037 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 IRX2Q9BZI1 471 aaPredicted RBP16.97■□□□□ 0.31
CLN3-253ENST00000636977 TFCP2L1Q9NZI6 479 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 PHLPP2Q6ZVD8 1323 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 RTL9Q8NET4 1388 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 ARHGAP6O43182 974 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 NR1I3Q14994 352 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 APTXQ7Z2E3 356 aaKnown RBP16.97■□□□□ 0.31
CLN3-253ENST00000636977 CATIPQ7Z7H3 387 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 AATFQ9NY61 560 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLN3-253ENST00000636977 CEP131Q9UPN4 1083 aa16.97■□□□□ 0.31
CLN3-253ENST00000636977 ERICH4A6NGS2 130 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 PRPF3O43395 683 aaKnown RBP16.96■□□□□ 0.31
CLN3-253ENST00000636977 H2AFXP16104 143 aaPredicted RBP16.96■□□□□ 0.31
CLN3-253ENST00000636977 BLZF1Q9H2G9 400 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 DUOX1Q9NRD9 1551 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 CLCN6P51797 869 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 KARSQ15046 597 aaKnown RBP16.96■□□□□ 0.31
CLN3-253ENST00000636977 NUTM2AQ8IVF1 878 aaPredicted RBP16.96■□□□□ 0.31
CLN3-253ENST00000636977 TNFRSF25Q93038 417 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 MTA3Q9BTC8 594 aa16.96■□□□□ 0.31
CLN3-253ENST00000636977 RCAN1P53805 252 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 SPATA31A1Q5TZJ5 1347 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 SOWAHDA6NJG2 315 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 GNG11P61952 73 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 MECOMQ03112 1051 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 PTGDRQ13258 359 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 DHX8Q14562 1220 aaKnown RBP16.95■□□□□ 0.3
CLN3-253ENST00000636977 MRPL44Q9H9J2 332 aaKnown RBP16.95■□□□□ 0.3
CLN3-253ENST00000636977 GNL3LQ9NVN8 582 aaKnown RBP16.95■□□□□ 0.3
CLN3-253ENST00000636977 MYH13Q9UKX3 1938 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 MYO1BO43795 1136 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 SLFN14P0C7P3 912 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 PRDX5P30044 214 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 CDC25AP30304 524 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 IRX3P78415 501 aaPredicted RBP16.95■□□□□ 0.3
CLN3-253ENST00000636977 CUL4BQ13620 913 aa16.95■□□□□ 0.3
CLN3-253ENST00000636977 IL17AQ16552 155 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms