RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 FEZ1Q99689 392 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 ANAPC4Q9UJX5 808 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 USP17L10C9JJH3 530 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 CDC45O75419 566 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 HMGCS2P54868 508 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 HAND2P61296 217 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 MTMR2Q13614 643 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 FAM43AQ8N2R8 423 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 CTNNA3Q9UI47 895 aa23.35■■□□□ 1.33
SHKBP1-214ENST00000597396 BACE1P56817 501 aa23.34■■□□□ 1.33
SHKBP1-214ENST00000597396 TAF1CQ15572 869 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-214ENST00000597396 ANKRD23Q86SG2 305 aa23.34■■□□□ 1.33
SHKBP1-214ENST00000597396 ESYT1Q9BSJ8 1104 aa23.34■■□□□ 1.33
SHKBP1-214ENST00000597396 TMOD4Q9NZQ9 345 aa23.34■■□□□ 1.33
SHKBP1-214ENST00000597396 C19orf81C9J6K1 198 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 ZNF213O14771 459 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 TBC1D8O95759 1140 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 ICA1Q05084 483 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 MOGSQ13724 837 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 KIAA1211Q6ZU35 1233 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 PROCA1Q8NCQ7 364 aaPredicted RBP23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 ZCCHC17Q9NP64 241 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 TOMM22Q9NS69 142 aa23.33■■□□□ 1.33
SHKBP1-214ENST00000597396 IMMTQ16891 758 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 SH3D19Q5HYK7 790 aa23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 USP17L2Q6R6M4 530 aa23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 CLEC10AQ8IUN9 316 aa23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 ACER1Q8TDN7 264 aa23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 ARHGEF10LQ9HCE6 1279 aa23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.32■■□□□ 1.32
SHKBP1-214ENST00000597396 PDHXO00330 501 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 TSPY3P0CV98 308 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 TSPY8P0CW00 308 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 USP14P54578 494 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 ATP2B2Q01814 1243 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 PTH1RQ03431 593 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 ZYXQ15942 572 aaKnown RBP23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 GPAT2Q6NUI2 795 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 KANSL2Q9H9L4 492 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 ZFYVE28Q9HCC9 887 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 AGTPBP1Q9UPW5 1226 aa23.31■■□□□ 1.32
SHKBP1-214ENST00000597396 RANBP6O60518 1105 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 CRHR2Q13324 411 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 FAM47AQ5JRC9 791 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 RRP12Q5JTH9 1297 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 AKNAD1Q5T1N1 836 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 MFSD6Q6ZSS7 791 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 CFHR5Q9BXR6 569 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 KIAA1683Q9H0B3 1180 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 RNF41Q9H4P4 317 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 SH2D4AQ9H788 454 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 INCENPQ9NQS7 918 aa23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 U3KPZ7 1027 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-214ENST00000597396 TSPY2A6NKD2 308 aa23.29■■□□□ 1.32
SHKBP1-214ENST00000597396 ORC4O43929 436 aa23.29■■□□□ 1.32
SHKBP1-214ENST00000597396 TFAP4Q01664 338 aa23.29■■□□□ 1.32
SHKBP1-214ENST00000597396 PABPC4Q13310 644 aaKnown RBP eCLIP23.29■■□□□ 1.321e-9■■■■□ 22.8
SHKBP1-214ENST00000597396 STAG1Q8WVM7 1258 aa23.29■■□□□ 1.32
SHKBP1-214ENST00000597396 TACC3Q9Y6A5 838 aa23.29■■□□□ 1.32
SHKBP1-214ENST00000597396 PCP11498 1178 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 EEF2P13639 858 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 TREML2Q5T2D2 321 aa23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 TBC1D10CQ8IV04 446 aa23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 NEDD1Q8NHV4 660 aa23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 PARK7Q99497 189 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 NBPF3Q9H094 633 aa23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 SLC45A1Q9Y2W3 748 aa23.28■■□□□ 1.32
SHKBP1-214ENST00000597396 PLIN4Q96Q06 1357 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 A0A1W2PRG0 241 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 FGRP09769 529 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 R3HDMLQ9H3Y0 253 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 ANO2Q9NQ90 1003 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 EMILIN3Q9NT22 766 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 PNMA3Q9UL41 463 aa23.27■■□□□ 1.32
SHKBP1-214ENST00000597396 MLLT1Q03111 559 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-214ENST00000597396 MAP4K1Q92918 833 aa23.26■■□□□ 1.31
SHKBP1-214ENST00000597396 C12orf42Q96LP6 360 aa23.26■■□□□ 1.31
SHKBP1-214ENST00000597396 TMX2Q9Y320 296 aa23.26■■□□□ 1.31
SHKBP1-214ENST00000597396 RBM8AQ9Y5S9 174 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-214ENST00000597396 IGKV6D-41A0A0C4DH26 115 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 GPR25O00155 361 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 OSBPP22059 807 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 SIAH1Q8IUQ4 282 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 CEP95Q96GE4 821 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 LSG1Q9H089 658 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 NYAP2Q9P242 653 aa23.25■■□□□ 1.31
SHKBP1-214ENST00000597396 CYP2C8P10632 490 aa23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 RGS19P49795 217 aa23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 IRX3P78415 501 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 PPP4R3BQ5MIZ7 849 aa23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 MTMR4Q9NYA4 1195 aa23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 NEDD4P46934 1319 aa23.24■■□□□ 1.31
SHKBP1-214ENST00000597396 RAD21O60216 631 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 TLR2O60603 784 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 TTLL1O95922 423 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 VCAM1P19320 739 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 NOM1Q5C9Z4 860 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 SMCR8Q8TEV9 937 aaPredicted RBP23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 ESR2Q92731 530 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms